Miyakogusa Predicted Gene

Lj0g3v0200599.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0200599.1 Non Characterized Hit- tr|D8SN19|D8SN19_SELML
Putative uncharacterized protein OS=Selaginella moelle,52.53,1e-18,DNA
POLYMERASE I,NULL; 5_3_exonuc,5'-3' exonuclease, C-terminal domain; no
description,NULL; 5' to 3,CUFF.12725.1
         (155 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g033525.1 | 5'-3' exonuclease-like protein | HC | chr6:108...   261   1e-70
Medtr6g033525.2 | 5'-3' exonuclease-like protein | HC | chr6:108...   176   7e-45

>Medtr6g033525.1 | 5'-3' exonuclease-like protein | HC |
           chr6:10861768-10857202 | 20130731
          Length = 379

 Score =  261 bits (668), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 124/154 (80%), Positives = 136/154 (88%), Gaps = 4/154 (2%)

Query: 1   MVMPLPDLQRWSFYTLRHYRDQYNCDPQSDLSLRCIVGDEVDGVPGIQHVVPSFGRKTAL 60
           +VMP P+LQRWSFYT +HYRDQYNCDPQSDLSLRCI+GDEVDGVPGIQH+VPSFG KTAL
Sbjct: 204 IVMPKPELQRWSFYTAKHYRDQYNCDPQSDLSLRCIIGDEVDGVPGIQHLVPSFGWKTAL 263

Query: 61  KLIKKHGSLETLLSAAEVRTVGRPYAQDALTKYADYLRRNYEVLALKMDVNVQLYEEWLV 120
           KLI+KHGSLE LL+AA VRTVGRPYAQDALTKYADYLRRNYEVLALK D+NVQL EEWLV
Sbjct: 264 KLIQKHGSLEALLNAAAVRTVGRPYAQDALTKYADYLRRNYEVLALKRDLNVQLLEEWLV 323

Query: 121 ERDTQNDAIALSTFFKYLEESKE----LTYNNRP 150
           +R+T ND +ALS  FKYLEESKE      + NRP
Sbjct: 324 DRNTHNDTVALSNLFKYLEESKEPITMRNFVNRP 357


>Medtr6g033525.2 | 5'-3' exonuclease-like protein | HC |
           chr6:10861768-10857202 | 20130731
          Length = 296

 Score =  176 bits (446), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 79/93 (84%), Positives = 87/93 (93%)

Query: 1   MVMPLPDLQRWSFYTLRHYRDQYNCDPQSDLSLRCIVGDEVDGVPGIQHVVPSFGRKTAL 60
           +VMP P+LQRWSFYT +HYRDQYNCDPQSDLSLRCI+GDEVDGVPGIQH+VPSFG KTAL
Sbjct: 204 IVMPKPELQRWSFYTAKHYRDQYNCDPQSDLSLRCIIGDEVDGVPGIQHLVPSFGWKTAL 263

Query: 61  KLIKKHGSLETLLSAAEVRTVGRPYAQDALTKY 93
           KLI+KHGSLE LL+AA VRTVGRPYAQDALT +
Sbjct: 264 KLIQKHGSLEALLNAAAVRTVGRPYAQDALTNW 296