Miyakogusa Predicted Gene

Lj0g3v0200599.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0200599.1 Non Chatacterized Hit- tr|D8SN19|D8SN19_SELML
Putative uncharacterized protein OS=Selaginella moelle,52.53,1e-18,DNA
POLYMERASE I,NULL; 5_3_exonuc,5'-3' exonuclease, C-terminal domain; no
description,NULL; 5' to 3,CUFF.12725.1
         (155 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G34380.2 | Symbols:  | 5'-3' exonuclease family protein | chr...   234   2e-62
AT1G34380.1 | Symbols:  | 5'-3' exonuclease family protein | chr...    65   2e-11

>AT1G34380.2 | Symbols:  | 5'-3' exonuclease family protein |
           chr1:12552839-12554299 REVERSE LENGTH=347
          Length = 347

 Score =  234 bits (597), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 106/138 (76%), Positives = 123/138 (89%)

Query: 1   MVMPLPDLQRWSFYTLRHYRDQYNCDPQSDLSLRCIVGDEVDGVPGIQHVVPSFGRKTAL 60
           +V+PL DL+RWSFYTL+HY  QYNCDPQSDLS RCI+GDEVDGVPGIQH+VP+FGRKTA+
Sbjct: 208 IVIPLADLRRWSFYTLKHYHAQYNCDPQSDLSFRCIMGDEVDGVPGIQHMVPAFGRKTAM 267

Query: 61  KLIKKHGSLETLLSAAEVRTVGRPYAQDALTKYADYLRRNYEVLALKMDVNVQLYEEWLV 120
           KL++KHGSLE+LLSAA VRTVGRPYAQ+ALTKYADYLRRNY+VLAL  DV VQ+  EWL+
Sbjct: 268 KLVRKHGSLESLLSAAAVRTVGRPYAQEALTKYADYLRRNYQVLALNRDVRVQIQNEWLM 327

Query: 121 ERDTQNDAIALSTFFKYL 138
           ERDT ND+  LS+FF  L
Sbjct: 328 ERDTSNDSEVLSSFFSTL 345


>AT1G34380.1 | Symbols:  | 5'-3' exonuclease family protein |
           chr1:12553297-12554299 REVERSE LENGTH=264
          Length = 264

 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 26/34 (76%), Positives = 30/34 (88%)

Query: 1   MVMPLPDLQRWSFYTLRHYRDQYNCDPQSDLSLR 34
           +V+PL DL+RWSFYTL+HY  QYNCDPQSDLS R
Sbjct: 208 IVIPLADLRRWSFYTLKHYHAQYNCDPQSDLSFR 241