Miyakogusa Predicted Gene

Lj0g3v0200599.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0200599.1 Non Chatacterized Hit- tr|D8SN19|D8SN19_SELML
Putative uncharacterized protein OS=Selaginella moelle,52.53,1e-18,DNA
POLYMERASE I,NULL; 5_3_exonuc,5'-3' exonuclease, C-terminal domain; no
description,NULL; 5' to 3,CUFF.12725.1
         (468 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC76953 weakly similar to UniRef100_A7Q7E0 Cluster: Chr...   410   e-114

>gnl|LJGI|TC76953 weakly similar to UniRef100_A7Q7E0 Cluster: Chromosome chr18
           scaffold_59, whole genome shotgun sequence; n=2; Vitis
           vinifera|Rep: Chromosome chr18 scaffold_59, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (18%)
          Length = 874

 Score =  410 bits (207), Expect = e-114
 Identities = 207/207 (100%)
 Strand = Plus / Plus

                                                                       
Query: 262 gatgcccttacaaagtatgctgattacctacggagaaactatgaagttcttgccttgaag 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  gatgcccttacaaagtatgctgattacctacggagaaactatgaagttcttgccttgaag 114

                                                                       
Query: 322 atggatgtaaatgtccaactttatgaagagtggttggtggagagagacactcaaaacgat 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 atggatgtaaatgtccaactttatgaagagtggttggtggagagagacactcaaaacgat 174

                                                                       
Query: 382 gcaattgcactatctaccttctttaaatatttggaagaaagtaaggagctcacctacaat 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 gcaattgcactatctaccttctttaaatatttggaagaaagtaaggagctcacctacaat 234

                                      
Query: 442 aacagacctaacctttataatggttga 468
           |||||||||||||||||||||||||||
Sbjct: 235 aacagacctaacctttataatggttga 261



 Score = 79.8 bits (40), Expect = 1e-14
 Identities = 47/48 (97%), Gaps = 1/48 (2%)
 Strand = Plus / Plus

                                                           
Query: 70  aattgtgatccccagtctgatctcagccttagatgtatagtaggtgat 117
           |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1   aattgtgatccccagtctgatctcag-cttagatgtatagtaggtgat 47