Miyakogusa Predicted Gene

Lj0g3v0188789.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0188789.1 Non Chatacterized Hit- tr|D8S6N7|D8S6N7_SELML
Putative uncharacterized protein OS=Selaginella
moelle,52.87,7e-19,Ribosomal_L37,Ribosomal protein L37, mitochondrial;
seg,NULL,CUFF.12023.1
         (131 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G01740.1 | Symbols:  | Mitochondrial ribosomal protein L37 | ...   146   4e-36
AT5G14290.1 | Symbols:  | Mitochondrial ribosomal protein L37 | ...   137   2e-33

>AT3G01740.1 | Symbols:  | Mitochondrial ribosomal protein L37 |
           chr3:268118-268498 FORWARD LENGTH=126
          Length = 126

 Score =  146 bits (368), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 67/82 (81%), Positives = 77/82 (93%)

Query: 50  LSKEVKSSTVVGANILKEGSDPKILPDSEYPDWLWHLLDKRPALSELRRKNIETLSYEYL 109
           L+KE+KS+TVVGAN LK+GSDPKILPDS+YPDWLWHLLDKRPALSELRRKN+ETL Y+ L
Sbjct: 45  LTKEIKSTTVVGANTLKDGSDPKILPDSDYPDWLWHLLDKRPALSELRRKNVETLPYDDL 104

Query: 110 KRYVKLDNRARIKENNSLKAKN 131
           KR+VKLD R +IKENNS+KAKN
Sbjct: 105 KRFVKLDTRGKIKENNSIKAKN 126


>AT5G14290.1 | Symbols:  | Mitochondrial ribosomal protein L37 |
           chr5:4612212-4612610 REVERSE LENGTH=132
          Length = 132

 Score =  137 bits (345), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/132 (54%), Positives = 91/132 (68%), Gaps = 3/132 (2%)

Query: 3   MNYVRSVRHILT-TKEAVGVASKRAFATXXXXXXXXXXXXXXXXX--XXXLSKEVKSSTV 59
           MN +R     ++ +K+ +    +R FAT                      LSKE+KSS V
Sbjct: 1   MNLIRMFGDSISRSKDVMRFVCQRTFATAAGKAKKVGRGDGGNDAPKASNLSKEIKSSMV 60

Query: 60  VGANILKEGSDPKILPDSEYPDWLWHLLDKRPALSELRRKNIETLSYEYLKRYVKLDNRA 119
           V AN LK+G DPKILP+S++PD+LWHLLDKRPALSELRRKN+ETLS++ LKR+VKLD RA
Sbjct: 61  VSANTLKDGLDPKILPNSDHPDYLWHLLDKRPALSELRRKNVETLSFDDLKRFVKLDTRA 120

Query: 120 RIKENNSLKAKN 131
           RIKEN+S+KAKN
Sbjct: 121 RIKENHSIKAKN 132