Miyakogusa Predicted Gene

Lj0g3v0175329.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0175329.1 tr|B9N719|B9N719_POPTR Plant synaptotagmin
OS=Populus trichocarpa GN=NTMC2T2.2 PE=4 SV=1,54.22,2e-19,C2 domain
(Calcium/lipid-binding domain, CaLB),C2 calcium/lipid-binding domain,
CaLB; C2,C2 calcium-,NODE_43372_length_482_cov_162.593369.path3.1
         (83 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11100.1 | Symbols: SYTD, ATSYTD, NTMC2TYPE2.2, NTMC2T2.2, SY...    79   8e-16
AT1G05500.1 | Symbols: SYTE, ATSYTE, NTMC2TYPE2.1, NTMC2T2.1, SY...    64   3e-11

>AT5G11100.1 | Symbols: SYTD, ATSYTD, NTMC2TYPE2.2, NTMC2T2.2, SYT4
           | Calcium-dependent lipid-binding (CaLB domain) family
           protein | chr5:3532402-3535221 FORWARD LENGTH=569
          Length = 569

 Score = 78.6 bits (192), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 54/81 (66%)

Query: 2   KNSFTNPLAPNCSMASLEEVCXXXXXXXXXXXXXXXVTEREKEVIIRGILSVTVISAEDL 61
           +    NP  P+ S+  LE+V                VT ++K+VI+RG+LSVTV++AEDL
Sbjct: 396 EGGLKNPFNPDYSLTILEKVLKPESEDSDATDMKKLVTSKKKDVIVRGVLSVTVVAAEDL 455

Query: 62  PALDFMGKSDPFVVLTLRKAK 82
           PA+DFMGK+D FVV+TL+K++
Sbjct: 456 PAVDFMGKADAFVVITLKKSE 476


>AT1G05500.1 | Symbols: SYTE, ATSYTE, NTMC2TYPE2.1, NTMC2T2.1, SYT5
           | Calcium-dependent lipid-binding (CaLB domain) family
           protein | chr1:1625098-1628940 FORWARD LENGTH=560
          Length = 560

 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 6/79 (7%)

Query: 3   NSFTNPLAPNCSMASLEEVCXXXXXXXXXXXXXXXVTEREKEVIIRGILSVTVISAEDLP 62
           N   NP     SM SLE V                 + + K+VI+RG+LSVTVISAE++P
Sbjct: 395 NGIVNPFV-TSSMTSLERVLKNDTTDEENAS-----SRKRKDVIVRGVLSVTVISAEEIP 448

Query: 63  ALDFMGKSDPFVVLTLRKA 81
             D MGK+DP+VVL+++K+
Sbjct: 449 IQDLMGKADPYVVLSMKKS 467