Miyakogusa Predicted Gene

Lj0g3v0173969.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0173969.1 Non Characterized Hit- tr|D8TT29|D8TT29_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,31.03,0.000000000002, ,CUFF.10926.1
         (144 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g019500.1 | transmembrane protein, putative | HC | chr5:73...   252   7e-68
Medtr5g019500.2 | transmembrane protein, putative | HC | chr5:73...   118   1e-27

>Medtr5g019500.1 | transmembrane protein, putative | HC |
           chr5:7363922-7383422 | 20130731
          Length = 939

 Score =  252 bits (644), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 121/143 (84%), Positives = 129/143 (90%)

Query: 1   MNFIFIGFEGKGNQEFKLLPEEIERWFTKIDHIFEHTRIRQEDVISAFYKTSAGKMQRHH 60
           +NFIFIGFEGKGNQEFKLLPEEIERWFTKIDHIFEHTRIR E+V++AF KTS  KMQR  
Sbjct: 100 INFIFIGFEGKGNQEFKLLPEEIERWFTKIDHIFEHTRIRHEEVLTAFDKTSVDKMQRRP 159

Query: 61  LPVASHINYNFSVHAIEMGEKVTSIFERALNVFGRKNNPLGSGDNDVGDWQVDVDMIDGV 120
           L VASHINYNFSVHAIEMGEKVTSIFE A+ VFGRK+ P+GSGDND GDWQVDVDMIDG+
Sbjct: 160 LHVASHINYNFSVHAIEMGEKVTSIFEHAIRVFGRKDAPVGSGDNDGGDWQVDVDMIDGL 219

Query: 121 LTSLVEYLQLEKAYNIFILNPKR 143
             SLVEYLQLE AYNIFILNPKR
Sbjct: 220 FASLVEYLQLENAYNIFILNPKR 242


>Medtr5g019500.2 | transmembrane protein, putative | HC |
           chr5:7366072-7383626 | 20130731
          Length = 762

 Score =  118 bits (296), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/66 (83%), Positives = 59/66 (89%)

Query: 78  MGEKVTSIFERALNVFGRKNNPLGSGDNDVGDWQVDVDMIDGVLTSLVEYLQLEKAYNIF 137
           MGEKVTSIFE A+ VFGRK+ P+GSGDND GDWQVDVDMIDG+  SLVEYLQLE AYNIF
Sbjct: 1   MGEKVTSIFEHAIRVFGRKDAPVGSGDNDGGDWQVDVDMIDGLFASLVEYLQLENAYNIF 60

Query: 138 ILNPKR 143
           ILNPKR
Sbjct: 61  ILNPKR 66