Miyakogusa Predicted Gene

Lj0g3v0173949.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0173949.1 Non Chatacterized Hit- tr|E9FU88|E9FU88_DAPPU
Putative uncharacterized protein OS=Daphnia pulex GN=D,44.55,6e-17,HAT
(Half-A-TPR) repeats,RNA-processing protein, HAT helix; RNA CLEAVAGE
STIMULATION FACTOR,NULL; Su,CUFF.10923.1
         (105 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g14930.1                                                       174   2e-44

>Glyma19g14930.1 
          Length = 804

 Score =  174 bits (440), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 80/84 (95%), Positives = 82/84 (97%)

Query: 1   MTFCLDKDPKMAHNVFEAGLKRFMHEPVYILEYADFLTRLNDDQNIRALFERALSSLPPK 60
           M FCLDKDPKMAHNVFEAGLKRFMHEPVYILEYADFL RLNDDQNIRALFERALSSLPP+
Sbjct: 422 MAFCLDKDPKMAHNVFEAGLKRFMHEPVYILEYADFLIRLNDDQNIRALFERALSSLPPE 481

Query: 61  ESVEVWKKFTQFEQTYGDLASMLK 84
           ESVEVWKKFT+FEQTYGDLASMLK
Sbjct: 482 ESVEVWKKFTKFEQTYGDLASMLK 505