Miyakogusa Predicted Gene

Lj0g3v0173949.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0173949.1 Non Characterized Hit- tr|E9FU88|E9FU88_DAPPU
Putative uncharacterized protein OS=Daphnia pulex GN=D,44.55,6e-17,HAT
(Half-A-TPR) repeats,RNA-processing protein, HAT helix; RNA CLEAVAGE
STIMULATION FACTOR,NULL; Su,CUFF.10923.1
         (105 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g026900.2 | cleavage stimulation factor | HC | chr6:909410...   160   2e-40
Medtr6g026900.1 | cleavage stimulation factor | HC | chr6:909424...   160   2e-40

>Medtr6g026900.2 | cleavage stimulation factor | HC |
           chr6:9094104-9083521 | 20130731
          Length = 721

 Score =  160 bits (406), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 74/84 (88%), Positives = 79/84 (94%)

Query: 1   MTFCLDKDPKMAHNVFEAGLKRFMHEPVYILEYADFLTRLNDDQNIRALFERALSSLPPK 60
           + FCLDKDPKMAHNVFEAGLK FMHEPVYILEYADFL RLNDDQNIRALFERALSSLP +
Sbjct: 378 VAFCLDKDPKMAHNVFEAGLKHFMHEPVYILEYADFLIRLNDDQNIRALFERALSSLPLE 437

Query: 61  ESVEVWKKFTQFEQTYGDLASMLK 84
           +SVEVWK+F +FEQTYGDLASMLK
Sbjct: 438 DSVEVWKRFVKFEQTYGDLASMLK 461


>Medtr6g026900.1 | cleavage stimulation factor | HC |
           chr6:9094247-9083521 | 20130731
          Length = 721

 Score =  160 bits (406), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 74/84 (88%), Positives = 79/84 (94%)

Query: 1   MTFCLDKDPKMAHNVFEAGLKRFMHEPVYILEYADFLTRLNDDQNIRALFERALSSLPPK 60
           + FCLDKDPKMAHNVFEAGLK FMHEPVYILEYADFL RLNDDQNIRALFERALSSLP +
Sbjct: 378 VAFCLDKDPKMAHNVFEAGLKHFMHEPVYILEYADFLIRLNDDQNIRALFERALSSLPLE 437

Query: 61  ESVEVWKKFTQFEQTYGDLASMLK 84
           +SVEVWK+F +FEQTYGDLASMLK
Sbjct: 438 DSVEVWKRFVKFEQTYGDLASMLK 461