Miyakogusa Predicted Gene

Lj0g3v0170419.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0170419.1 Non Characterized Hit- tr|F6HE76|F6HE76_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,87.76,3.9937e-43,Sm-like ribonucleoproteins,Like-Sm (LSM) domain;
LSM1,NULL; LSM,Ribonucleoprotein LSM domain; snRNP ,CUFF.10728.1
         (98 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g084910.1 | u6 snRNA-associated-like-Smprotein | HC | chr4...   177   3e-45
Medtr1g085050.1 | like-Sm protein | HC | chr1:37967704-37968391 ...    96   6e-21
Medtr2g042700.2 | small nuclear ribonucleoprotein | HC | chr2:18...    64   4e-11
Medtr2g042700.1 | small nuclear ribonucleoprotein | HC | chr2:18...    63   5e-11
Medtr8g021250.2 | small nuclear ribonucleoprotein | HC | chr8:76...    62   1e-10
Medtr8g021250.1 | small nuclear ribonucleoprotein | HC | chr8:76...    61   2e-10

>Medtr4g084910.1 | u6 snRNA-associated-like-Smprotein | HC |
          chr4:33145686-33149143 | 20130731
          Length = 99

 Score =  177 bits (448), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 89/99 (89%), Positives = 96/99 (96%), Gaps = 1/99 (1%)

Query: 1  MSTG-PGLESLVDQQISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQIVL 59
          M+TG PGLESLVDQQISVITNDGRNIVGVLKGFDQATNIILDESHERVFST+EGVQQ+VL
Sbjct: 1  MATGGPGLESLVDQQISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTREGVQQLVL 60

Query: 60 GLYIIRGDNISVVGELDLDLDRSLDMTKLRAHPLKPVIH 98
          GLYIIRGDNISVVGELD +LD SLD+++LRAHPLKPVIH
Sbjct: 61 GLYIIRGDNISVVGELDEELDSSLDLSQLRAHPLKPVIH 99


>Medtr1g085050.1 | like-Sm protein | HC | chr1:37967704-37968391 |
          20130731
          Length = 91

 Score = 96.3 bits (238), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 58/79 (73%), Gaps = 11/79 (13%)

Query: 20 NDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQIVLGLYIIRGDNISVVGELDLDL 79
          NDGRNIVGVLKGFDQATNIIL ESHER     +G+  I           ++VVG+LD DL
Sbjct: 24 NDGRNIVGVLKGFDQATNIILVESHERTRLFYQGMNSI-----------LTVVGKLDEDL 72

Query: 80 DRSLDMTKLRAHPLKPVIH 98
          D SLD++KLRAHPLKPVIH
Sbjct: 73 DSSLDLSKLRAHPLKPVIH 91


>Medtr2g042700.2 | small nuclear ribonucleoprotein | HC |
          chr2:18621829-18626292 | 20130731
          Length = 110

 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 50/71 (70%), Gaps = 1/71 (1%)

Query: 7  LESLVDQQISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQIVLGLYIIRG 66
          L + +D+++ V+  DGR ++G+L+ FDQ  N++L+ + ERV    +    + LGLY+IRG
Sbjct: 15 LATYLDKKLLVLLRDGRKLLGLLRSFDQFANVVLEGACERVI-VGDLYCDVPLGLYVIRG 73

Query: 67 DNISVVGELDL 77
          +N+ ++GELDL
Sbjct: 74 ENVVLIGELDL 84


>Medtr2g042700.1 | small nuclear ribonucleoprotein | HC |
          chr2:18621815-18626360 | 20130731
          Length = 128

 Score = 63.2 bits (152), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 50/71 (70%), Gaps = 1/71 (1%)

Query: 7  LESLVDQQISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQIVLGLYIIRG 66
          L + +D+++ V+  DGR ++G+L+ FDQ  N++L+ + ERV    +    + LGLY+IRG
Sbjct: 15 LATYLDKKLLVLLRDGRKLLGLLRSFDQFANVVLEGACERVI-VGDLYCDVPLGLYVIRG 73

Query: 67 DNISVVGELDL 77
          +N+ ++GELDL
Sbjct: 74 ENVVLIGELDL 84


>Medtr8g021250.2 | small nuclear ribonucleoprotein | HC |
          chr8:7638060-7641793 | 20130731
          Length = 129

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 49/73 (67%), Gaps = 1/73 (1%)

Query: 6  GLESLVDQQISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQIVLGLYIIR 65
           L S +D+++ ++  DGR ++G L+ FDQ  N +L+ + ERV    +    I LGLY+IR
Sbjct: 14 SLASYLDKKLLILLRDGRKLMGTLRSFDQFANAVLEGACERVI-VGDLYCDIPLGLYVIR 72

Query: 66 GDNISVVGELDLD 78
          G+N+ ++GE+D++
Sbjct: 73 GENVVLIGEMDVE 85


>Medtr8g021250.1 | small nuclear ribonucleoprotein | HC |
          chr8:7638054-7641793 | 20130731
          Length = 128

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 49/73 (67%), Gaps = 1/73 (1%)

Query: 6  GLESLVDQQISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQIVLGLYIIR 65
           L S +D+++ ++  DGR ++G L+ FDQ  N +L+ + ERV    +    I LGLY+IR
Sbjct: 14 SLASYLDKKLLILLRDGRKLMGTLRSFDQFANAVLEGACERVI-VGDLYCDIPLGLYVIR 72

Query: 66 GDNISVVGELDLD 78
          G+N+ ++GE+D++
Sbjct: 73 GENVVLIGEMDVE 85