Miyakogusa Predicted Gene

Lj0g3v0170419.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0170419.1 Non Chatacterized Hit- tr|F6HE76|F6HE76_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,87.76,3.9937e-43,Sm-like ribonucleoproteins,Like-Sm (LSM) domain;
LSM1,NULL; LSM,Ribonucleoprotein LSM domain; snRNP ,CUFF.10728.1
         (98 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G65700.2 | Symbols:  | Small nuclear ribonucleoprotein family...   167   2e-42
AT1G65700.1 | Symbols:  | Small nuclear ribonucleoprotein family...   167   2e-42
AT1G65700.3 | Symbols:  | Small nuclear ribonucleoprotein family...   147   2e-36
AT1G19120.1 | Symbols:  | Small nuclear ribonucleoprotein family...    67   2e-12
AT3G14080.2 | Symbols:  | Small nuclear ribonucleoprotein family...    64   3e-11
AT3G14080.1 | Symbols:  | Small nuclear ribonucleoprotein family...    64   3e-11

>AT1G65700.2 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr1:24434463-24435870 REVERSE LENGTH=98
          Length = 98

 Score =  167 bits (423), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 83/98 (84%), Positives = 89/98 (90%)

Query: 1  MSTGPGLESLVDQQISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQIVLG 60
          M+   GLE+LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQ VLG
Sbjct: 1  MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLG 60

Query: 61 LYIIRGDNISVVGELDLDLDRSLDMTKLRAHPLKPVIH 98
          LYIIRGDNI V+GELD +LD SLD +KLRAHPLKPV+H
Sbjct: 61 LYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH 98


>AT1G65700.1 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr1:24434463-24435870 REVERSE LENGTH=98
          Length = 98

 Score =  167 bits (423), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 83/98 (84%), Positives = 89/98 (90%)

Query: 1  MSTGPGLESLVDQQISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQIVLG 60
          M+   GLE+LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQ VLG
Sbjct: 1  MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLG 60

Query: 61 LYIIRGDNISVVGELDLDLDRSLDMTKLRAHPLKPVIH 98
          LYIIRGDNI V+GELD +LD SLD +KLRAHPLKPV+H
Sbjct: 61 LYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH 98


>AT1G65700.3 | Symbols:  | Small nuclear ribonucleoprotein family
           protein | chr1:24434463-24435870 REVERSE LENGTH=141
          Length = 141

 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/141 (58%), Positives = 89/141 (63%), Gaps = 43/141 (30%)

Query: 1   MSTGPGLESLVDQQISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTK--------- 51
           M+   GLE+LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTK         
Sbjct: 1   MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKCHLFNRILR 60

Query: 52  ----------------------------------EGVQQIVLGLYIIRGDNISVVGELDL 77
                                             EGVQQ VLGLYIIRGDNI V+GELD 
Sbjct: 61  KLTQIFKIGLVLQFFVCMSGHVDTSLDKCSWIFLEGVQQHVLGLYIIRGDNIGVIGELDE 120

Query: 78  DLDRSLDMTKLRAHPLKPVIH 98
           +LD SLD +KLRAHPLKPV+H
Sbjct: 121 ELDASLDFSKLRAHPLKPVVH 141


>AT1G19120.1 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr1:6608288-6609162 FORWARD LENGTH=128
          Length = 128

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 52/73 (71%), Gaps = 1/73 (1%)

Query: 6  GLESLVDQQISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQIVLGLYIIR 65
           L + +D+++ V+  DGR ++G+L+ FDQ  N +L+E++ERV    +    I LGLYIIR
Sbjct: 14 SLAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVI-VGDLYCDIPLGLYIIR 72

Query: 66 GDNISVVGELDLD 78
          G+N+ ++GELD++
Sbjct: 73 GENVVLIGELDVE 85


>AT3G14080.2 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr3:4667717-4668989 FORWARD LENGTH=128
          Length = 128

 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 1/72 (1%)

Query: 7  LESLVDQQISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQIVLGLYIIRG 66
          L S +D+++ V+  DGR ++G L+ FDQ  N +L+ + ERV    E    I LGLY+IRG
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVI-VGEQYCDIPLGLYVIRG 73

Query: 67 DNISVVGELDLD 78
          +N+ ++GELD +
Sbjct: 74 ENVVLIGELDTE 85


>AT3G14080.1 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr3:4667717-4668989 FORWARD LENGTH=128
          Length = 128

 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 1/72 (1%)

Query: 7  LESLVDQQISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQIVLGLYIIRG 66
          L S +D+++ V+  DGR ++G L+ FDQ  N +L+ + ERV    E    I LGLY+IRG
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVI-VGEQYCDIPLGLYVIRG 73

Query: 67 DNISVVGELDLD 78
          +N+ ++GELD +
Sbjct: 74 ENVVLIGELDTE 85