Miyakogusa Predicted Gene
- Lj0g3v0170419.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0170419.1 Non Chatacterized Hit- tr|F6HE76|F6HE76_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,87.76,3.9937e-43,Sm-like ribonucleoproteins,Like-Sm (LSM) domain;
LSM1,NULL; LSM,Ribonucleoprotein LSM domain; snRNP ,CUFF.10728.1
(297 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58270 similar to UniRef100_A7PAX0 Cluster: Chromosome... 589 e-168
gnl|LJGI|AV765798 similar to UniRef100_A7PAX0 Cluster: Chromosom... 398 e-111
gnl|LJGI|TC66167 similar to UniRef100_A7PAX0 Cluster: Chromosome... 345 9e-95
gnl|LJGI|BP057444 similar to UniRef100_A7PAX0 Cluster: Chromosom... 341 1e-93
>gnl|LJGI|TC58270 similar to UniRef100_A7PAX0 Cluster: Chromosome chr16 scaffold_10,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_10, whole genome shotgun
sequence - Vitis vinifera (Grape), complete
Length = 919
Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus
Query: 1 atgtcgactgggcctggacttgagtctcttgtcgatcagcaaatttcagtaattacaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 atgtcgactgggcctggacttgagtctcttgtcgatcagcaaatttcagtaattacaaat 267
Query: 61 gatggacgaaatatagtgggtgtcctaaaaggctttgaccaggcaactaatataattctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gatggacgaaatatagtgggtgtcctaaaaggctttgaccaggcaactaatataattctt 327
Query: 121 gatgagtcccatgaacgagttttttctaccaaggaaggcgtccagcaaatagttctcggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gatgagtcccatgaacgagttttttctaccaaggaaggcgtccagcaaatagttctcggt 387
Query: 181 ttatacatcattaggggtgacaacataagtgttgtcggtgaactggatttggatcttgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttatacatcattaggggtgacaacataagtgttgtcggtgaactggatttggatcttgat 447
Query: 241 aggagccttgatatgaccaagcttagagctcatccgttgaagcctgtcatccactga 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aggagccttgatatgaccaagcttagagctcatccgttgaagcctgtcatccactga 504
>gnl|LJGI|AV765798 similar to UniRef100_A7PAX0 Cluster: Chromosome chr16 scaffold_10,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_10, whole genome shotgun
sequence - Vitis vinifera (Grape), complete
Length = 552
Score = 398 bits (201), Expect = e-111
Identities = 273/297 (91%)
Strand = Plus / Plus
Query: 1 atgtcgactgggcctggacttgagtctcttgtcgatcagcaaatttcagtaattacaaat 60
|||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 179 atgtcgaccgggcctggacttgagtctcttgtagatcagcaaatttcagtgattacaaat 238
Query: 61 gatggacgaaatatagtgggtgtcctaaaaggctttgaccaggcaactaatataattctt 120
||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||
Sbjct: 239 gatggacgaaatatagtgggtaccctaaaaggttttgaccaggcaacgaatataattctt 298
Query: 121 gatgagtcccatgaacgagttttttctaccaaggaaggcgtccagcaaatagttctcggt 180
|||||||||||||||||||||||||||||||||||||| || |||| ||| | |||||||
Sbjct: 299 gatgagtcccatgaacgagttttttctaccaaggaaggtgtacagctaattgctctcggt 358
Query: 181 ttatacatcattaggggtgacaacataagtgttgtcggtgaactggatttggatcttgat 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 359 ctatacatcattaggggtgacaacataagtgttgtcggtgaactggatgaggatctagat 418
Query: 241 aggagccttgatatgaccaagcttagagctcatccgttgaagcctgtcatccactga 297
| | |||||||| | ||||| |||||||||| || |||||||||||||||||||||
Sbjct: 419 aaaaaccttgataagtccaagattagagctcagcctttgaagcctgtcatccactga 475
>gnl|LJGI|TC66167 similar to UniRef100_A7PAX0 Cluster: Chromosome chr16 scaffold_10,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_10, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (98%)
Length = 782
Score = 345 bits (174), Expect = 9e-95
Identities = 273/308 (88%), Gaps = 11/308 (3%)
Strand = Plus / Plus
Query: 1 atgtcgactgggcctggacttgagtctcttgtcgatc-----------agcaaatttcag 49
|||||||| ||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 224 atgtcgaccgggcctggacttgagtctcttgtagatcgtaagcaatctagcaaatttcag 283
Query: 50 taattacaaatgatggacgaaatatagtgggtgtcctaaaaggctttgaccaggcaacta 109
| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
Sbjct: 284 tgattacaaatgatggacgaaatatagtgggtaccctaaaaggttttgaccaggcaacga 343
Query: 110 atataattcttgatgagtcccatgaacgagttttttctaccaaggaaggcgtccagcaaa 169
||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct: 344 atataattcttgatgagtcccatgaacgagttttttctaccaaggaaggtgtacagctaa 403
Query: 170 tagttctcggtttatacatcattaggggtgacaacataagtgttgtcggtgaactggatt 229
| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ttgctctcggtctatacatcattaggggtgacaacataagtgttgtcggtgaactggatg 463
Query: 230 tggatcttgataggagccttgatatgaccaagcttagagctcatccgttgaagcctgtca 289
|||||| |||| | |||||||| | ||||| |||||||||| || |||||||||||||
Sbjct: 464 aggatctagataaaaaccttgataagtccaagattagagctcagcctttgaagcctgtca 523
Query: 290 tccactga 297
||||||||
Sbjct: 524 tccactga 531
>gnl|LJGI|BP057444 similar to UniRef100_A7PAX0 Cluster: Chromosome chr16 scaffold_10,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_10, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (86%)
Length = 527
Score = 341 bits (172), Expect = 1e-93
Identities = 238/260 (91%)
Strand = Plus / Minus
Query: 38 agcaaatttcagtaattacaaatgatggacgaaatatagtgggtgtcctaaaaggctttg 97
||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 415 agcaaatttcagtgattacaaatgatggacgaaatatagtgggtaccctaaaaggttttg 356
Query: 98 accaggcaactaatataattcttgatgagtcccatgaacgagttttttctaccaaggaag 157
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 accaggcaacgaatataattcttgatgagtcccatgaacgagttttttctaccaaggaag 296
Query: 158 gcgtccagcaaatagttctcggtttatacatcattaggggtgacaacataagtgttgtcg 217
| || |||| ||| | ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 295 gtgtacagctaattgctctcggtctatacatcattaggggtgacaacataagtgttgtcg 236
Query: 218 gtgaactggatttggatcttgataggagccttgatatgaccaagcttagagctcatccgt 277
||||||||||| |||||| |||| | |||||||| | ||||| |||||||||| || |
Sbjct: 235 gtgaactggatgaggatctagataaaaaccttgataagtccaagattagagctcagcctt 176
Query: 278 tgaagcctgtcatccactga 297
||||||||||||||||||||
Sbjct: 175 tgaagcctgtcatccactga 156