Miyakogusa Predicted Gene

Lj0g3v0164179.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0164179.1 Non Characterized Hit- tr|B9EZQ4|B9EZQ4_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,44.09,3e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.10271.1
         (287 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0004s0130.1 | structural constituent of cell wall protein, ...   185   5e-47
Medtr2g090360.2 | structural constituent of cell wall protein, p...   139   3e-33
Medtr2g090360.1 | structural constituent of cell wall protein, p...   138   5e-33
Medtr6g004930.1 | DNA-binding protein, putative | HC | chr6:5063...    55   6e-08
Medtr2g090365.1 | PHD finger and bromo-adjacent-like domain prot...    55   1e-07

>Medtr0004s0130.1 | structural constituent of cell wall protein,
           putative | HC | scaffold0004:37626-31693 | 20130731
          Length = 527

 Score =  185 bits (469), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 105/167 (62%), Positives = 126/167 (75%), Gaps = 13/167 (7%)

Query: 62  NSTQDFDQTRAERTLIFPDTSYNPPEDSSSQDAIATVEKNMKKYVDNLMRFLEGISSKLS 121
           NST+DF ++R  RT +FP  +YNPPEDS SQD IATVEK+MKKY DNLMRFLEGISS+LS
Sbjct: 42  NSTKDFHKSRVARTSVFPAPAYNPPEDSLSQDVIATVEKSMKKYADNLMRFLEGISSRLS 101

Query: 122 QLELHYYNLDQSIGEMKSELNFNLGEQYSKLKSLEKHLQEIHSSEQVLR----------- 170
           QLEL+ YNLD+SIGE++S+LN + G+Q SKLKSLEKH+QE+H S Q+LR           
Sbjct: 102 QLELYCYNLDKSIGEIRSDLNRDHGDQDSKLKSLEKHVQEVHRSVQILRDKQELAETQKE 161

Query: 171 -VKPQLAQKESSSLRHSLSNEDR-SPSTKYAKKTDNASDAPNRWISF 215
             K QLAQKESSS  HS SNED+ SPST   KK DNASD  N+ ++ 
Sbjct: 162 LAKLQLAQKESSSSSHSQSNEDKSSPSTTDPKKADNASDTNNQQLAL 208


>Medtr2g090360.2 | structural constituent of cell wall protein,
           putative | LC | chr2:38466128-38468084 | 20130731
          Length = 480

 Score =  139 bits (351), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/155 (57%), Positives = 106/155 (68%), Gaps = 14/155 (9%)

Query: 65  QDFDQTRAERTLIFPDTSYNPPEDSSSQDAIAT-VEKNMKKYVDNLMRFLEGISSKLSQL 123
           QDF  +R  +T  FP T+YN PE S SQ+ IAT VEK+MK   D+LMRFLEGISS+LSQL
Sbjct: 22  QDFHISRMVKTSTFPATAYNSPEVSLSQEVIATTVEKSMKTCTDDLMRFLEGISSRLSQL 81

Query: 124 ELHYYNLDQSIGEMKSELNFNLGEQYSKLKSLEKHLQEIHSSEQVLR------------V 171
           EL+ YN+D+SIGE+KSEL  +  E  SKLKSL+KHLQE+H S Q+LR             
Sbjct: 82  ELYCYNIDKSIGELKSELTSDHEEADSKLKSLDKHLQEVHRSVQILRDKQELVETQKELA 141

Query: 172 KPQLAQKESSSLRHSLSNEDR-SPSTKYAKKTDNA 205
           K QLA+K S S  HS SNE+R SPS    K TDNA
Sbjct: 142 KLQLARKGSPSSSHSQSNEERFSPSAIDQKGTDNA 176


>Medtr2g090360.1 | structural constituent of cell wall protein,
           putative | LC | chr2:38464803-38468087 | 20130731
          Length = 500

 Score =  138 bits (348), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 89/158 (56%), Positives = 108/158 (68%), Gaps = 14/158 (8%)

Query: 62  NSTQDFDQTRAERTLIFPDTSYNPPEDSSSQDAIAT-VEKNMKKYVDNLMRFLEGISSKL 120
           +S +DF  +R  +T  FP T+YN PE S SQ+ IAT VEK+MK   D+LMRFLEGISS+L
Sbjct: 39  DSNKDFHISRMVKTSTFPATAYNSPEVSLSQEVIATTVEKSMKTCTDDLMRFLEGISSRL 98

Query: 121 SQLELHYYNLDQSIGEMKSELNFNLGEQYSKLKSLEKHLQEIHSSEQVLR---------- 170
           SQLEL+ YN+D+SIGE+KSEL  +  E  SKLKSL+KHLQE+H S Q+LR          
Sbjct: 99  SQLELYCYNIDKSIGELKSELTSDHEEADSKLKSLDKHLQEVHRSVQILRDKQELVETQK 158

Query: 171 --VKPQLAQKESSSLRHSLSNEDR-SPSTKYAKKTDNA 205
              K QLA+K S S  HS SNE+R SPS    K TDNA
Sbjct: 159 ELAKLQLARKGSPSSSHSQSNEERFSPSAIDQKGTDNA 196


>Medtr6g004930.1 | DNA-binding protein, putative | HC |
           chr6:506365-512095 | 20130731
          Length = 565

 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 59/98 (60%), Gaps = 2/98 (2%)

Query: 98  VEKNMKKYVDNLMRFLEGISSKLSQLELHYYNLDQSIGEMKSELNFNLGEQYSKLKSLEK 157
           +++ MKK++DNL   LEG+S++L+Q+E   ++L+ S+ ++K  +  N G    KL+ LE 
Sbjct: 130 IDRTMKKHMDNLHHVLEGVSARLTQVETRTHHLESSMDDLKVSVGNNHGITDGKLRLLEN 189

Query: 158 HLQEIHSSEQVLRVKPQL--AQKESSSLRHSLSNEDRS 193
            L E+ +    ++ K  +  AQ + + L+ S + E +S
Sbjct: 190 ILSEVQTGVHDIKDKQDIMQAQLQLAKLQVSKTTEQQS 227


>Medtr2g090365.1 | PHD finger and bromo-adjacent-like domain
           protein, putative | HC | chr2:38471494-38475361 |
           20130731
          Length = 453

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 38/52 (73%), Gaps = 1/52 (1%)

Query: 64  TQDFDQTRAERTLIFPDTSYNPPEDSSSQDAIAT-VEKNMKKYVDNLMRFLE 114
           ++DF+ ++  +T I P T+YN PE S SQD IAT VEK+MK   DNLM+FL+
Sbjct: 34  SKDFNISKIAKTSIVPATAYNSPEVSLSQDVIATIVEKSMKTCTDNLMQFLD 85