Miyakogusa Predicted Gene

Lj0g3v0163519.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0163519.2 Non Characterized Hit- tr|K3Y967|K3Y967_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si010731,67.44,4e-19,coiled-coil,NULL,CUFF.10202.2
         (121 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g079460.1 | hypothetical protein | HC | chr2:33443561-3344...   213   4e-56

>Medtr2g079460.1 | hypothetical protein | HC |
           chr2:33443561-33449037 | 20130731
          Length = 341

 Score =  213 bits (541), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 104/121 (85%), Positives = 112/121 (92%)

Query: 1   MFKAFMEDHNTATFPSKKYYNLDAYYRRQMEKELKKGFKKVPAKERTVFNDEEQRRLELL 60
           MFK FMEDHNTATFPSKKYY+LDAYYRRQMEKE+KKG+KK+  KERTVFNDEEQRR E+L
Sbjct: 221 MFKEFMEDHNTATFPSKKYYSLDAYYRRQMEKEMKKGYKKIQPKERTVFNDEEQRRQEML 280

Query: 61  QAREKHKEEQVRSLKHSMESGMAQAMKEQAQLREEMAYQYKLGNFEAAAAIQRRVDPDPA 120
           QAREK KEEQV +LK  MESGMAQAMKEQAQLREEMAYQYKLGNFEAAAAIQRR+DPD A
Sbjct: 281 QAREKQKEEQVIALKREMESGMAQAMKEQAQLREEMAYQYKLGNFEAAAAIQRRLDPDAA 340

Query: 121 M 121
           +
Sbjct: 341 V 341