Miyakogusa Predicted Gene
- Lj0g3v0163029.3
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0163029.3 Non Chatacterized Hit- tr|K3Y4N1|K3Y4N1_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si009169,64.91,0.000000000000002,beta and beta-prime subunits of
DNA dependent RNA-polymerase,NULL; seg,NULL; RNA_pol_Rpb1_1,RNA
poly,CUFF.10153.3
(93 letters)
Database: trembl
41,451,118 sequences; 13,208,986,710 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
K7M0Q7_SOYBN (tr|K7M0Q7) DNA-directed RNA polymerase OS=Glycine ... 157 1e-36
K7MDF9_SOYBN (tr|K7MDF9) DNA-directed RNA polymerase OS=Glycine ... 157 1e-36
K7MDF7_SOYBN (tr|K7MDF7) DNA-directed RNA polymerase OS=Glycine ... 157 1e-36
K7MDF5_SOYBN (tr|K7MDF5) DNA-directed RNA polymerase OS=Glycine ... 157 1e-36
I1MIR6_SOYBN (tr|I1MIR6) DNA-directed RNA polymerase OS=Glycine ... 157 1e-36
M5XM01_PRUPE (tr|M5XM01) Uncharacterized protein OS=Prunus persi... 145 6e-33
B9GWX9_POPTR (tr|B9GWX9) DNA-directed RNA polymerase OS=Populus ... 138 6e-31
B9RGA8_RICCO (tr|B9RGA8) DNA-directed RNA polymerase OS=Ricinus ... 133 2e-29
G7LG09_MEDTR (tr|G7LG09) DNA-directed RNA polymerase OS=Medicago... 132 4e-29
F6I5R3_VITVI (tr|F6I5R3) DNA-directed RNA polymerase OS=Vitis vi... 130 2e-28
K4B027_SOLLC (tr|K4B027) DNA-directed RNA polymerase OS=Solanum ... 122 5e-26
R0FV63_9BRAS (tr|R0FV63) Uncharacterized protein OS=Capsella rub... 119 5e-25
M4C7I4_BRARP (tr|M4C7I4) DNA-directed RNA polymerase OS=Brassica... 114 1e-23
M8BMS2_AEGTA (tr|M8BMS2) DNA-directed RNA polymerase II subunit ... 112 6e-23
M0WRB9_HORVD (tr|M0WRB9) DNA-directed RNA polymerase OS=Hordeum ... 111 1e-22
D7LEE8_ARALL (tr|D7LEE8) DNA-directed RNA polymerase OS=Arabidop... 110 2e-22
I1IV91_BRADI (tr|I1IV91) DNA-directed RNA polymerase OS=Brachypo... 108 9e-22
B8AHU1_ORYSI (tr|B8AHU1) DNA-directed RNA polymerase OS=Oryza sa... 107 1e-21
K3YP74_SETIT (tr|K3YP74) DNA-directed RNA polymerase OS=Setaria ... 106 3e-21
B9F2S6_ORYSJ (tr|B9F2S6) DNA-directed RNA polymerase OS=Oryza sa... 106 3e-21
I1NXC6_ORYGL (tr|I1NXC6) DNA-directed RNA polymerase OS=Oryza gl... 106 3e-21
J3L9M9_ORYBR (tr|J3L9M9) DNA-directed RNA polymerase OS=Oryza br... 105 4e-21
M0SC37_MUSAM (tr|M0SC37) DNA-directed RNA polymerase OS=Musa acu... 104 1e-20
Q0E3V3_ORYSJ (tr|Q0E3V3) DNA-directed RNA polymerase (Fragment) ... 100 2e-19
K3Y4N1_SETIT (tr|K3Y4N1) DNA-directed RNA polymerase OS=Setaria ... 84 1e-14
J3L864_ORYBR (tr|J3L864) DNA-directed RNA polymerase OS=Oryza br... 84 1e-14
I1NVI7_ORYGL (tr|I1NVI7) DNA-directed RNA polymerase OS=Oryza gl... 82 5e-14
Q5JJW0_ORYSJ (tr|Q5JJW0) DNA-directed RNA polymerase OS=Oryza sa... 79 4e-13
B9EWM0_ORYSJ (tr|B9EWM0) DNA-directed RNA polymerase OS=Oryza sa... 79 5e-13
C5XJ93_SORBI (tr|C5XJ93) DNA-directed RNA polymerase (Fragment) ... 76 5e-12
A9SIX8_PHYPA (tr|A9SIX8) DNA-directed RNA polymerase OS=Physcomi... 64 2e-08
B8A9M1_ORYSI (tr|B8A9M1) DNA-directed RNA polymerase OS=Oryza sa... 64 2e-08
>K7M0Q7_SOYBN (tr|K7M0Q7) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 2020
Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 67/93 (72%), Positives = 74/93 (79%)
Query: 1 MEDNPTSSVLDAEVVGIRFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC 60
MEDNP SSVLD VVGI+FGMATRQEICT NPFLGLPLE+GRCESC
Sbjct: 1 MEDNPPSSVLDGTVVGIKFGMATRQEICTASISESSISHASQLSNPFLGLPLEFGRCESC 60
Query: 61 GTSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
GTSE GKCEGHFGY+ELP+PIYHP+H+SELKR+
Sbjct: 61 GTSEVGKCEGHFGYVELPVPIYHPSHISELKRM 93
>K7MDF9_SOYBN (tr|K7MDF9) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 2049
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 68/93 (73%), Positives = 74/93 (79%)
Query: 1 MEDNPTSSVLDAEVVGIRFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC 60
MEDNP SSVLD VVGI+FGMATRQEICT NPFLGLPLE+GRCESC
Sbjct: 1 MEDNPPSSVLDGTVVGIKFGMATRQEICTASISDSSISHASQLSNPFLGLPLEFGRCESC 60
Query: 61 GTSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
GTSE GKCEGHFGYIELPIPIYHP+H+S+LKR+
Sbjct: 61 GTSEVGKCEGHFGYIELPIPIYHPSHISDLKRM 93
>K7MDF7_SOYBN (tr|K7MDF7) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 2065
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 68/93 (73%), Positives = 74/93 (79%)
Query: 1 MEDNPTSSVLDAEVVGIRFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC 60
MEDNP SSVLD VVGI+FGMATRQEICT NPFLGLPLE+GRCESC
Sbjct: 1 MEDNPPSSVLDGTVVGIKFGMATRQEICTASISDSSISHASQLSNPFLGLPLEFGRCESC 60
Query: 61 GTSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
GTSE GKCEGHFGYIELPIPIYHP+H+S+LKR+
Sbjct: 61 GTSEVGKCEGHFGYIELPIPIYHPSHISDLKRM 93
>K7MDF5_SOYBN (tr|K7MDF5) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
Length = 2082
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 68/93 (73%), Positives = 74/93 (79%)
Query: 1 MEDNPTSSVLDAEVVGIRFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC 60
MEDNP SSVLD VVGI+FGMATRQEICT NPFLGLPLE+GRCESC
Sbjct: 1 MEDNPPSSVLDGTVVGIKFGMATRQEICTASISDSSISHASQLSNPFLGLPLEFGRCESC 60
Query: 61 GTSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
GTSE GKCEGHFGYIELPIPIYHP+H+S+LKR+
Sbjct: 61 GTSEVGKCEGHFGYIELPIPIYHPSHISDLKRM 93
>I1MIR6_SOYBN (tr|I1MIR6) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=2
Length = 2098
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 68/93 (73%), Positives = 74/93 (79%)
Query: 1 MEDNPTSSVLDAEVVGIRFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC 60
MEDNP SSVLD VVGI+FGMATRQEICT NPFLGLPLE+GRCESC
Sbjct: 1 MEDNPPSSVLDGTVVGIKFGMATRQEICTASISDSSISHASQLSNPFLGLPLEFGRCESC 60
Query: 61 GTSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
GTSE GKCEGHFGYIELPIPIYHP+H+S+LKR+
Sbjct: 61 GTSEVGKCEGHFGYIELPIPIYHPSHISDLKRM 93
>M5XM01_PRUPE (tr|M5XM01) Uncharacterized protein OS=Prunus persica
GN=PRUPE_ppa000088mg PE=4 SV=1
Length = 1855
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 61/93 (65%), Positives = 73/93 (78%)
Query: 1 MEDNPTSSVLDAEVVGIRFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC 60
ME+ +S++L+ E+ GI+FG+AT QEICT NPFLGLPLE+G+CESC
Sbjct: 1 MEEASSSTILEGEITGIKFGLATHQEICTASISNCAISHASQLSNPFLGLPLEFGKCESC 60
Query: 61 GTSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
GTSEAGKCEGHFGYIELPIPI+HPNHVSELKR+
Sbjct: 61 GTSEAGKCEGHFGYIELPIPIFHPNHVSELKRM 93
>B9GWX9_POPTR (tr|B9GWX9) DNA-directed RNA polymerase OS=Populus trichocarpa
GN=NRPD903 PE=3 SV=1
Length = 924
Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats.
Identities = 58/93 (62%), Positives = 71/93 (76%)
Query: 1 MEDNPTSSVLDAEVVGIRFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC 60
M++N SS+ D E+ GIRFG+AT++EICT NPFLGLPLE+G+CESC
Sbjct: 1 MDENSQSSIFDGEITGIRFGLATQKEICTASISDCPISHSSQLTNPFLGLPLEFGKCESC 60
Query: 61 GTSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
GTSE GKCEGHFG+I LPIPIYHP+H+SELKR+
Sbjct: 61 GTSEPGKCEGHFGFIHLPIPIYHPSHISELKRM 93
>B9RGA8_RICCO (tr|B9RGA8) DNA-directed RNA polymerase OS=Ricinus communis
GN=RCOM_1452510 PE=3 SV=1
Length = 991
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 62/95 (65%), Positives = 70/95 (73%), Gaps = 2/95 (2%)
Query: 1 MED--NPTSSVLDAEVVGIRFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCE 58
MED N SS L+ EVVGI+FG+AT +EI NPFLGLPLE+G+CE
Sbjct: 1 MEDKENTQSSFLEGEVVGIKFGLATYKEISAASVSDCPISHSSQLTNPFLGLPLEFGKCE 60
Query: 59 SCGTSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
SCGTSE GKCEGHFGYIELPIPIYHP+HVSELKR+
Sbjct: 61 SCGTSEPGKCEGHFGYIELPIPIYHPSHVSELKRM 95
>G7LG09_MEDTR (tr|G7LG09) DNA-directed RNA polymerase OS=Medicago truncatula
GN=MTR_8g038990 PE=3 SV=1
Length = 2032
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 64/123 (52%), Positives = 73/123 (59%), Gaps = 30/123 (24%)
Query: 1 MEDNPTSSVLDAEVVGIRFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC 60
MEDN T+S+LD +VVGIRF MATR EI T NPFLGLPLE+GRCESC
Sbjct: 53 MEDNATTSLLDGKVVGIRFSMATRHEISTASISDSQISHASQLANPFLGLPLEFGRCESC 112
Query: 61 GTSEAGKCE------------------------------GHFGYIELPIPIYHPNHVSEL 90
GTSEAGKCE GHFGYIELP+PIYHP+HV+EL
Sbjct: 113 GTSEAGKCEGLLFDHFLYCHSDGKMLYFKRIGLNNYYFSGHFGYIELPVPIYHPSHVTEL 172
Query: 91 KRV 93
K++
Sbjct: 173 KKI 175
>F6I5R3_VITVI (tr|F6I5R3) DNA-directed RNA polymerase OS=Vitis vinifera
GN=VIT_13s0067g03120 PE=3 SV=1
Length = 996
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/93 (64%), Positives = 72/93 (77%), Gaps = 1/93 (1%)
Query: 1 MEDNPTSSVLDAEVVGIRFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC 60
ME++ +S++LD E+ GIRFG+ATRQEIC NPFLGLPLE+G+CESC
Sbjct: 1 MEED-SSTILDGEISGIRFGLATRQEICIASVSDCPISHASQLTNPFLGLPLEFGKCESC 59
Query: 61 GTSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
GT+E G+CEGHFGYIELPIPIYHP HVSELKR+
Sbjct: 60 GTAEPGQCEGHFGYIELPIPIYHPGHVSELKRM 92
>K4B027_SOLLC (tr|K4B027) DNA-directed RNA polymerase OS=Solanum lycopersicum
GN=Solyc01g096390.2 PE=3 SV=1
Length = 1678
Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats.
Identities = 56/92 (60%), Positives = 65/92 (70%)
Query: 2 EDNPTSSVLDAEVVGIRFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESCG 61
E + +S V D V I+FG+AT QEIC NPFLGLPLE GRCESCG
Sbjct: 47 EKSLSSKVSDGIVKRIKFGLATPQEICKSSISDCPITHPSLLLNPFLGLPLEAGRCESCG 106
Query: 62 TSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
T+E G+CEGHFGYIELPIPIYHP+HVSELK++
Sbjct: 107 TAEPGQCEGHFGYIELPIPIYHPDHVSELKKM 138
>R0FV63_9BRAS (tr|R0FV63) Uncharacterized protein OS=Capsella rubella
GN=CARUB_v10022497mg PE=4 SV=1
Length = 1959
Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats.
Identities = 50/93 (53%), Positives = 63/93 (67%)
Query: 1 MEDNPTSSVLDAEVVGIRFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC 60
ME+ +S V + E+VGI F +A+ EIC NPFLGLPLE+G+CESC
Sbjct: 1 MEEASSSEVPEGEIVGITFALASHHEICIASISESSINHASQLSNPFLGLPLEFGKCESC 60
Query: 61 GTSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
G +E KCEGHFGYI+LP+PIYHP HV ELK++
Sbjct: 61 GATEPDKCEGHFGYIQLPVPIYHPAHVIELKQM 93
>M4C7I4_BRARP (tr|M4C7I4) DNA-directed RNA polymerase OS=Brassica rapa subsp.
pekinensis GN=Bra000162 PE=3 SV=1
Length = 2059
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 49/93 (52%), Positives = 64/93 (68%)
Query: 1 MEDNPTSSVLDAEVVGIRFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC 60
ME+ +S +L+AE+VGI F +AT ++I N FLGLPLE+G+CE+C
Sbjct: 1 MEEASSSDILEAEIVGISFALATHRQIRLASISDAGINHASQLSNAFLGLPLEFGKCEAC 60
Query: 61 GTSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
G +E KCEGHFGYI LP+PIYHP HVSELK++
Sbjct: 61 GATEPDKCEGHFGYIHLPVPIYHPAHVSELKQM 93
>M8BMS2_AEGTA (tr|M8BMS2) DNA-directed RNA polymerase II subunit RPB1-B
OS=Aegilops tauschii GN=F775_02057 PE=4 SV=1
Length = 2017
Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats.
Identities = 50/95 (52%), Positives = 65/95 (68%), Gaps = 2/95 (2%)
Query: 1 MEDNPTSSVLDAE--VVGIRFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCE 58
ME+ S+VL AE + I+ ++T +EICT NPFLGLPLE G+CE
Sbjct: 45 MEEEDQSAVLVAEGAIKSIKLSLSTEEEICTYSINDCPVTHPSQLGNPFLGLPLETGKCE 104
Query: 59 SCGTSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
SCG +E GKCEGHFG+IELP+P+YHP HVSEL+++
Sbjct: 105 SCGATENGKCEGHFGFIELPVPVYHPCHVSELRQL 139
>M0WRB9_HORVD (tr|M0WRB9) DNA-directed RNA polymerase OS=Hordeum vulgare var.
distichum PE=3 SV=1
Length = 1139
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 51/95 (53%), Positives = 64/95 (67%), Gaps = 2/95 (2%)
Query: 1 MEDNPTSSVLDAE--VVGIRFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCE 58
ME+ SSVL AE + I+ ++T EICT NPFLGLPLE G+CE
Sbjct: 1 MEEEDQSSVLVAEGAIKSIKLSLSTENEICTYSINDCPVTHPSQLGNPFLGLPLETGKCE 60
Query: 59 SCGTSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
SCG +E GKCEGHFG+IELP+P+YHP HVSEL+++
Sbjct: 61 SCGATENGKCEGHFGFIELPVPVYHPCHVSELRQL 95
>D7LEE8_ARALL (tr|D7LEE8) DNA-directed RNA polymerase OS=Arabidopsis lyrata
subsp. lyrata GN=ARALYDRAFT_483042 PE=3 SV=1
Length = 1947
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 45/80 (56%), Positives = 56/80 (70%)
Query: 14 VVGIRFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESCGTSEAGKCEGHFG 73
+VGI+F +AT EIC N FLGLPLE+G+CESCG +E KCEGHFG
Sbjct: 14 IVGIKFALATHHEICIASISGSAINHPSQLTNSFLGLPLEFGKCESCGATEPDKCEGHFG 73
Query: 74 YIELPIPIYHPNHVSELKRV 93
YI+LP+PIYHP HV+ELK++
Sbjct: 74 YIQLPVPIYHPAHVNELKQM 93
>I1IV91_BRADI (tr|I1IV91) DNA-directed RNA polymerase OS=Brachypodium
distachyon GN=BRADI4G45065 PE=3 SV=1
Length = 1954
Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats.
Identities = 48/92 (52%), Positives = 58/92 (63%)
Query: 2 EDNPTSSVLDAEVVGIRFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESCG 61
ED V + + I+ ++T EI T NPFLGLPLE G+CESCG
Sbjct: 3 EDQSAVLVAEGAIKSIKLSLSTEDEILTYSINDCPVTHPSQLGNPFLGLPLETGKCESCG 62
Query: 62 TSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
SE GKCEGHFGYIELP+PIYHP HVSEL+++
Sbjct: 63 ASENGKCEGHFGYIELPVPIYHPCHVSELRQL 94
>B8AHU1_ORYSI (tr|B8AHU1) DNA-directed RNA polymerase OS=Oryza sativa subsp.
indica GN=OsI_05888 PE=3 SV=1
Length = 1867
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 47/92 (51%), Positives = 58/92 (63%)
Query: 2 EDNPTSSVLDAEVVGIRFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESCG 61
ED V + + I+ ++T EI T NPFLGLPLE G+CESCG
Sbjct: 3 EDQSAIPVAEGAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCESCG 62
Query: 62 TSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
SE GKCEGHFGYIELP+PIYHP HV+EL+++
Sbjct: 63 ASENGKCEGHFGYIELPVPIYHPCHVTELRQI 94
>K3YP74_SETIT (tr|K3YP74) DNA-directed RNA polymerase OS=Setaria italica
GN=Si016066m.g PE=3 SV=1
Length = 2050
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 49/95 (51%), Positives = 65/95 (68%), Gaps = 3/95 (3%)
Query: 1 MEDNPTSSVLDAE--VVGIRFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCE 58
ME++ S++L AE + I+ ++T +EICT NPFLGLPLE G+CE
Sbjct: 1 MEED-QSAILFAEGAIKSIKLSLSTEEEICTYSINDCPVNHPSQLANPFLGLPLEAGKCE 59
Query: 59 SCGTSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
+CG SE KCEGHFGYIELP+PIYHP H+SEL+++
Sbjct: 60 ACGASENDKCEGHFGYIELPVPIYHPCHISELRQL 94
>B9F2S6_ORYSJ (tr|B9F2S6) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_05410 PE=2 SV=1
Length = 2017
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 47/92 (51%), Positives = 58/92 (63%)
Query: 2 EDNPTSSVLDAEVVGIRFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESCG 61
ED V + + I+ ++T EI T NPFLGLPLE G+CESCG
Sbjct: 3 EDQSAIPVAEGAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCESCG 62
Query: 62 TSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
SE GKCEGHFGYIELP+PIYHP HV+EL+++
Sbjct: 63 ASENGKCEGHFGYIELPVPIYHPCHVTELRQI 94
>I1NXC6_ORYGL (tr|I1NXC6) DNA-directed RNA polymerase OS=Oryza glaberrima PE=3
SV=1
Length = 1630
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 47/92 (51%), Positives = 58/92 (63%)
Query: 2 EDNPTSSVLDAEVVGIRFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESCG 61
ED V + + I+ ++T EI T NPFLGLPLE G+CESCG
Sbjct: 3 EDQSAIPVAEGAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCESCG 62
Query: 62 TSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
SE GKCEGHFGYIELP+PIYHP HV+EL+++
Sbjct: 63 ASENGKCEGHFGYIELPVPIYHPCHVTELRQI 94
>J3L9M9_ORYBR (tr|J3L9M9) DNA-directed RNA polymerase OS=Oryza brachyantha
GN=OB02G13460 PE=3 SV=1
Length = 2034
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 47/92 (51%), Positives = 57/92 (61%)
Query: 2 EDNPTSSVLDAEVVGIRFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESCG 61
ED V + + I+ +AT EI NPFLGLPLE G+CESCG
Sbjct: 44 EDQSAIPVAEGAIKSIKLSLATEDEIRIYSINDCPVTHPSQLGNPFLGLPLETGKCESCG 103
Query: 62 TSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
SE GKCEGHFGYIELP+PIYHP HV+EL+++
Sbjct: 104 ASENGKCEGHFGYIELPVPIYHPCHVTELRQI 135
>M0SC37_MUSAM (tr|M0SC37) DNA-directed RNA polymerase OS=Musa acuminata subsp.
malaccensis PE=3 SV=1
Length = 144
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/94 (55%), Positives = 63/94 (67%), Gaps = 1/94 (1%)
Query: 1 MEDNPTSS-VLDAEVVGIRFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCES 59
MED +S VLD + I+F +AT +EI T NPFLGLPLE G CE+
Sbjct: 1 MEDQVSSPLVLDGSICSIKFSIATAEEIRTYSISDCPISHPSQLANPFLGLPLESGGCET 60
Query: 60 CGTSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
CGT+E G CEGHFGYIELPIP+YHP+HVSEL+ +
Sbjct: 61 CGTAEIGNCEGHFGYIELPIPVYHPSHVSELRDL 94
>Q0E3V3_ORYSJ (tr|Q0E3V3) DNA-directed RNA polymerase (Fragment) OS=Oryza
sativa subsp. japonica GN=Os02g0152800 PE=2 SV=1
Length = 488
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/92 (51%), Positives = 58/92 (63%)
Query: 2 EDNPTSSVLDAEVVGIRFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESCG 61
ED V + + I+ ++T EI T NPFLGLPLE G+CESCG
Sbjct: 3 EDQSAIPVAEGAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCESCG 62
Query: 62 TSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
SE GKCEGHFGYIELP+PIYHP HV+EL+++
Sbjct: 63 ASENGKCEGHFGYIELPVPIYHPCHVTELRQI 94
>K3Y4N1_SETIT (tr|K3Y4N1) DNA-directed RNA polymerase OS=Setaria italica
GN=Si009169m.g PE=3 SV=1
Length = 1546
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/49 (65%), Positives = 41/49 (83%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
NP LGLPL+ G CESCG ++ +CEGHFG+IELP PIYHP+HV+EL ++
Sbjct: 56 NPSLGLPLQVGSCESCGATQLDRCEGHFGFIELPAPIYHPSHVAELGKI 104
>J3L864_ORYBR (tr|J3L864) DNA-directed RNA polymerase OS=Oryza brachyantha
GN=OB01G54200 PE=3 SV=1
Length = 1576
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/49 (61%), Positives = 43/49 (87%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
NP LG+PL+ G C+SCG++ + +CEGHFG+IELP+PIYHP+HV+EL ++
Sbjct: 74 NPHLGMPLQVGSCQSCGSASSEECEGHFGFIELPVPIYHPSHVTELSKM 122
>I1NVI7_ORYGL (tr|I1NVI7) DNA-directed RNA polymerase OS=Oryza glaberrima PE=3
SV=1
Length = 1567
Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 30/49 (61%), Positives = 43/49 (87%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
NP+LGLPL+ G C+SCG++ +CEGHFG+IELP+PI+HP+HV+EL ++
Sbjct: 57 NPYLGLPLQVGSCQSCGSNAIEECEGHFGFIELPMPIFHPSHVTELSQI 105
>Q5JJW0_ORYSJ (tr|Q5JJW0) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=P0458E05.13 PE=3 SV=1
Length = 1568
Score = 79.3 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/49 (59%), Positives = 42/49 (85%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
NP+LGLPL+ G C+SCG++ +CEGHF +IELP+PI+HP+HV+EL ++
Sbjct: 57 NPYLGLPLQVGSCQSCGSNAIEECEGHFRFIELPMPIFHPSHVTELSQI 105
>B9EWM0_ORYSJ (tr|B9EWM0) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_04874 PE=3 SV=1
Length = 1528
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 29/49 (59%), Positives = 42/49 (85%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
NP+LGLPL+ G C+SCG++ +CEGHF +IELP+PI+HP+HV+EL ++
Sbjct: 57 NPYLGLPLQVGSCQSCGSNAIEECEGHFRFIELPMPIFHPSHVTELSQI 105
>C5XJ93_SORBI (tr|C5XJ93) DNA-directed RNA polymerase (Fragment) OS=Sorghum
bicolor GN=Sb03g046922 PE=3 SV=1
Length = 1571
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 30/50 (60%), Positives = 41/50 (82%), Gaps = 1/50 (2%)
Query: 45 NPFLGLPLEYGR-CESCGTSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
NP LGLPL+ G CESCG ++ KC+GHFG+I+LP PIYHP+H++EL ++
Sbjct: 55 NPSLGLPLQDGSTCESCGATQLDKCDGHFGFIKLPEPIYHPSHIAELGKI 104
>A9SIX8_PHYPA (tr|A9SIX8) DNA-directed RNA polymerase OS=Physcomitrella patens
subsp. patens GN=NRPDA1501 PE=3 SV=1
Length = 2458
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 12 AEVVGIRFGMATRQEICTXXXXXXXXX-XXXXXXNPFLGLPLEYGRCESCGTSEAGKCEG 70
A++VG++ G+AT EI +P LGLP E RC +CG + +C G
Sbjct: 239 ADLVGLQIGLATTSEILGHSVIESRSKDTLISLVDPRLGLPAEDERCATCGGTNYDECTG 298
Query: 71 HFGYIELPIPIYHPNHVSELKRV 93
HF +++L PI+HPN++ ++RV
Sbjct: 299 HFAHVKLTQPIFHPNYIRCVQRV 321
>B8A9M1_ORYSI (tr|B8A9M1) DNA-directed RNA polymerase OS=Oryza sativa subsp.
indica GN=OsI_05331 PE=3 SV=1
Length = 1465
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/49 (53%), Positives = 36/49 (73%), Gaps = 7/49 (14%)
Query: 45 NPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
NP+LGLPL+ G +CEGHFG+IELP+PI+HP+HV+EL ++
Sbjct: 120 NPYLGLPLQVG-------DAIEECEGHFGFIELPMPIFHPSHVTELSQI 161