Miyakogusa Predicted Gene

Lj0g3v0163029.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0163029.3 Non Chatacterized Hit- tr|K3Y4N1|K3Y4N1_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si009169,64.91,0.000000000000002,beta and beta-prime subunits of
DNA dependent RNA-polymerase,NULL; seg,NULL; RNA_pol_Rpb1_1,RNA
poly,CUFF.10153.3
         (93 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g37710.1                                                       157   3e-39
Glyma11g02920.1                                                        52   2e-07

>Glyma15g37710.1 
          Length = 2101

 Score =  157 bits (397), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 68/93 (73%), Positives = 74/93 (79%)

Query: 1  MEDNPTSSVLDAEVVGIRFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC 60
          MEDNP SSVLD  VVGI+FGMATRQEICT               NPFLGLPLE+GRCESC
Sbjct: 1  MEDNPPSSVLDGTVVGIKFGMATRQEICTASISDSSISHASQLSNPFLGLPLEFGRCESC 60

Query: 61 GTSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
          GTSE GKCEGHFGYIELPIPIYHP+H+S+LKR+
Sbjct: 61 GTSEVGKCEGHFGYIELPIPIYHPSHISDLKRM 93


>Glyma11g02920.1 
          Length = 1385

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 27/46 (58%)

Query: 48 LGLPLEYGRCESCGTSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
          LG P     C +CG+ +   CEGHFG I+ P PI HP  +SE+  +
Sbjct: 20 LGFPNASDECATCGSKDKRFCEGHFGVIKFPTPILHPYFMSEIAHI 65