Miyakogusa Predicted Gene

Lj0g3v0163029.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0163029.3 Non Characterized Hit- tr|K3Y4N1|K3Y4N1_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si009169,64.91,0.000000000000002,beta and beta-prime subunits of
DNA dependent RNA-polymerase,NULL; seg,NULL; RNA_pol_Rpb1_1,RNA
poly,CUFF.10153.3
         (93 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g038990.1 | DNA-directed RNA polymerase | HC | chr8:144590...   148   1e-36
Medtr5g011000.1 | DNA-directed RNA polymerase | HC | chr5:306076...    49   1e-06

>Medtr8g038990.1 | DNA-directed RNA polymerase | HC |
           chr8:14459096-14475944 | 20130731
          Length = 2010

 Score =  148 bits (374), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/93 (68%), Positives = 73/93 (78%)

Query: 1   MEDNPTSSVLDAEVVGIRFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC 60
           MEDN T+S+LD +VVGIRF MATR EI T               NPFLGLPLE+GRCESC
Sbjct: 23  MEDNATTSLLDGKVVGIRFSMATRHEISTASISDSQISHASQLANPFLGLPLEFGRCESC 82

Query: 61  GTSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
           GTSEAGKCEGHFGYIELP+PIYHP+HV+ELK++
Sbjct: 83  GTSEAGKCEGHFGYIELPVPIYHPSHVTELKKI 115


>Medtr5g011000.1 | DNA-directed RNA polymerase | HC |
          chr5:3060764-3075383 | 20130731
          Length = 1519

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 27/46 (58%)

Query: 48 LGLPLEYGRCESCGTSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
          LGLP     C +CG+ +   CEGHFG I+ P  I HP  ++E+  +
Sbjct: 49 LGLPNSSYGCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEI 94