Miyakogusa Predicted Gene

Lj0g3v0163029.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0163029.3 Non Chatacterized Hit- tr|K3Y4N1|K3Y4N1_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si009169,64.91,0.000000000000002,beta and beta-prime subunits of
DNA dependent RNA-polymerase,NULL; seg,NULL; RNA_pol_Rpb1_1,RNA
poly,CUFF.10153.3
         (93 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G40030.1 | Symbols: NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 | nuc...   122   4e-29

>AT2G40030.1 | Symbols: NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 |
          nuclear RNA polymerase D1B | chr2:16715089-16723406
          FORWARD LENGTH=1976
          Length = 1976

 Score =  122 bits (307), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/93 (54%), Positives = 64/93 (68%)

Query: 1  MEDNPTSSVLDAEVVGIRFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC 60
          ME+  TS +LD E+VGI F +A+  EIC                N FLGLPLE+G+CESC
Sbjct: 1  MEEESTSEILDGEIVGITFALASHHEICIQSISESAINHPSQLTNAFLGLPLEFGKCESC 60

Query: 61 GTSEAGKCEGHFGYIELPIPIYHPNHVSELKRV 93
          G +E  KCEGHFGYI+LP+PIYHP HV+ELK++
Sbjct: 61 GATEPDKCEGHFGYIQLPVPIYHPAHVNELKQM 93