Miyakogusa Predicted Gene
- Lj0g3v0160799.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0160799.1 tr|G7KFP7|G7KFP7_MEDTR DNA-binding protein
SMUBP-2 OS=Medicago truncatula GN=MTR_5g076380 PE=4
SV=1,56.3,0,SUBFAMILY NOT NAMED,NULL; DNA2/NAM7 HELICASE FAMILY,NULL;
P-loop containing nucleoside triphosphate ,CUFF.9978.1
(332 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G65810.2 | Symbols: | P-loop containing nucleoside triphosph... 228 6e-60
AT1G65810.1 | Symbols: | P-loop containing nucleoside triphosph... 228 7e-60
AT1G65780.1 | Symbols: | P-loop containing nucleoside triphosph... 209 2e-54
AT5G37140.1 | Symbols: | P-loop containing nucleoside triphosph... 197 1e-50
AT5G52090.1 | Symbols: | P-loop containing nucleoside triphosph... 174 1e-43
AT5G37150.1 | Symbols: | P-loop containing nucleoside triphosph... 172 4e-43
AT4G05540.1 | Symbols: | P-loop containing nucleoside triphosph... 167 7e-42
AT5G37160.1 | Symbols: | P-loop containing nucleoside triphosph... 156 1e-38
AT5G37030.1 | Symbols: | P-loop containing nucleoside triphosph... 130 1e-30
AT2G03270.1 | Symbols: | DNA-binding protein, putative | chr2:9... 54 1e-07
AT5G47010.1 | Symbols: UPF1, LBA1, ATUPF1 | RNA helicase, putati... 52 4e-07
>AT1G65810.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:24477043-24480728
REVERSE LENGTH=1016
Length = 1016
Score = 228 bits (580), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 126/301 (41%), Positives = 176/301 (58%), Gaps = 17/301 (5%)
Query: 2 ITNIRPQSVDDLNRPGSYYNITYVRGSKHPFTDKVSVLSSK--------CIEVSDLRSNH 53
+T+ RP +DDL Y + V G +++L+SK I+ S R
Sbjct: 132 VTDKRPIRIDDLRFSHEPYLLALVCGVNENNPHLITILASKPIIFDDDDDIKTSSKRGKG 191
Query: 54 NK----LYAIYLMNLTTNFRIWKALNSQQKGGNMNIIKRVLQPDSNVRGGENCQICLSGE 109
+ + + L+N+ TN RIW AL+ +GGN+ +I RVLQ ++ V GG +C C
Sbjct: 192 ERKSLSFFGVNLINMMTNIRIWTALHPNPEGGNLKLISRVLQSNNEVDGG-SCVSCKENS 250
Query: 110 NPQASLIIPGIIRSQNLNESQEDAVSSCVNMINCNH-NNTKLIWGPPGTGKTKTVACLLF 168
S ++RS LN SQEDA+ C+ +CNH NN KLIWGPPGTGKTKT + LL
Sbjct: 251 ESVVSDYSARMLRSFKLNSSQEDAILRCLEAKSCNHSNNIKLIWGPPGTGKTKTTSVLLL 310
Query: 169 SLVKLEARTLTCAPTNTAVIQVATRLLSLVTSSNEYETYGLGDIVLFGNKTRMKVDSYEG 228
+ +K+ RTLTCAPTN AV++V +RL+ LV+ S ++ YGLGDIVLFGNK RMK+D E
Sbjct: 311 NFLKMRCRTLTCAPTNIAVLEVCSRLVKLVSESLRFDGYGLGDIVLFGNKERMKIDDRED 370
Query: 229 LEDVFLDYRVKSLLKC---LTGWKHDFESMILLLQEPRKQYLLLHGNEKGLVSLEESAVE 285
L DVFL+YRV L +C LTGW+ + MI LL +P+ ++ L+S ++ E
Sbjct: 371 LFDVFLEYRVDELYRCFMALTGWRANVNRMICLLSDPKHEFRQFKSVNTTLLSFKDFVEE 430
Query: 286 K 286
+
Sbjct: 431 R 431
>AT1G65810.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:24477043-24480728
REVERSE LENGTH=1050
Length = 1050
Score = 228 bits (580), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 126/301 (41%), Positives = 176/301 (58%), Gaps = 17/301 (5%)
Query: 2 ITNIRPQSVDDLNRPGSYYNITYVRGSKHPFTDKVSVLSSK--------CIEVSDLRSNH 53
+T+ RP +DDL Y + V G +++L+SK I+ S R
Sbjct: 132 VTDKRPIRIDDLRFSHEPYLLALVCGVNENNPHLITILASKPIIFDDDDDIKTSSKRGKG 191
Query: 54 NK----LYAIYLMNLTTNFRIWKALNSQQKGGNMNIIKRVLQPDSNVRGGENCQICLSGE 109
+ + + L+N+ TN RIW AL+ +GGN+ +I RVLQ ++ V GG +C C
Sbjct: 192 ERKSLSFFGVNLINMMTNIRIWTALHPNPEGGNLKLISRVLQSNNEVDGG-SCVSCKENS 250
Query: 110 NPQASLIIPGIIRSQNLNESQEDAVSSCVNMINCNH-NNTKLIWGPPGTGKTKTVACLLF 168
S ++RS LN SQEDA+ C+ +CNH NN KLIWGPPGTGKTKT + LL
Sbjct: 251 ESVVSDYSARMLRSFKLNSSQEDAILRCLEAKSCNHSNNIKLIWGPPGTGKTKTTSVLLL 310
Query: 169 SLVKLEARTLTCAPTNTAVIQVATRLLSLVTSSNEYETYGLGDIVLFGNKTRMKVDSYEG 228
+ +K+ RTLTCAPTN AV++V +RL+ LV+ S ++ YGLGDIVLFGNK RMK+D E
Sbjct: 311 NFLKMRCRTLTCAPTNIAVLEVCSRLVKLVSESLRFDGYGLGDIVLFGNKERMKIDDRED 370
Query: 229 LEDVFLDYRVKSLLKC---LTGWKHDFESMILLLQEPRKQYLLLHGNEKGLVSLEESAVE 285
L DVFL+YRV L +C LTGW+ + MI LL +P+ ++ L+S ++ E
Sbjct: 371 LFDVFLEYRVDELYRCFMALTGWRANVNRMICLLSDPKHEFRQFKSVNTTLLSFKDFVEE 430
Query: 286 K 286
+
Sbjct: 431 R 431
>AT1G65780.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:24462958-24466888
REVERSE LENGTH=1065
Length = 1065
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 123/301 (40%), Positives = 175/301 (58%), Gaps = 18/301 (5%)
Query: 2 ITNIRPQSVDDLNRPGSYYNITYVRGSKHPFTDKVSVLSSKCIEVSDLRSNHN----KLY 57
+T+ RP VD N Y + V + V++L+SK + V D R N +L+
Sbjct: 117 LTDQRPNHVDGFNISSEPYIVALVCKVDPDRPNDVTILASKPLFVEDGRRKKNEKKERLF 176
Query: 58 AIYLMNLTTNFRIWKALNSQQKGGNMNIIKRVLQPDSNVRGGENCQICLSGENPQASLII 117
I+L+NLTTN RIW AL+ +G N+N+I RVL+ R E+ C+ + +
Sbjct: 177 GIHLVNLTTNIRIWNALHPGDEGVNLNLISRVLR-----RNSEDEGFCIQCLQEGSDGLA 231
Query: 118 PGIIRSQNLNESQEDAVSSCVNMINCNHNNT-KLIWGPPGTGKTKTVACLLFSLVKLEAR 176
P R LN SQEDA+ +C+++ C H NT +LIWGPPGTGKTKT + LLF+L+ + R
Sbjct: 232 PR--RFLKLNPSQEDAILNCLDVRRCYHANTVRLIWGPPGTGKTKTTSVLLFTLLNAKCR 289
Query: 177 TLTCAPTNTAVIQVATRLLSLVTSSNEYETYGLGDIVLFGNKTRMKVDSYEGLEDVFLDY 236
TLTC PTN +V++VA+R+L LV+ S + YGLGD+VLFGN RMK+ + L ++F+D
Sbjct: 290 TLTCGPTNVSVLEVASRVLKLVSGSLKIGNYGLGDVVLFGNDERMKIKDRKDLVNIFIDE 349
Query: 237 RVKSLLKCLT---GWKHDFESMILLLQEPRKQYLLLHGN---EKGLVSLEESAVEKDKGN 290
RV L C GWK + MI LL++P+ QY L N + + +V K KGN
Sbjct: 350 RVDKLYPCFMPFYGWKATIDGMIRLLEDPKGQYNLYLENLARANNVKRKDTGSVFKRKGN 409
Query: 291 D 291
+
Sbjct: 410 E 410
>AT5G37140.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:14690436-14692851
FORWARD LENGTH=692
Length = 692
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 110/215 (51%), Positives = 142/215 (66%), Gaps = 12/215 (5%)
Query: 57 YAIYLMNLTTNFRIWKALNSQQKGGNMNIIKRVLQPDSNVRGGENCQICLSGENPQASLI 116
+ ++LMNLTTN RIW AL+++ N +IK VLQ N E C +C SG S
Sbjct: 12 FGVFLMNLTTNTRIWNALHNE--AANSTLIKSVLQE--NTLTTEQC-VCESG--AHGSDR 64
Query: 117 IPGIIRSQNLNESQEDAVSSCVNMINCNHNNT-KLIWGPPGTGKTKTVACLLFSLVKLEA 175
+ IIRS LN SQE A+ SC+ + NCNH ++ KLIWGPPGTGKTKTVA LLF L+KL
Sbjct: 65 VTNIIRSAKLNSSQEAAILSCLKIRNCNHKHSVKLIWGPPGTGKTKTVATLLFCLLKLSC 124
Query: 176 RTLTCAPTNTAVIQVATRLLSLV-TSSNEYETYGLGDIVLFGNKTRMKVDSYEGLEDVFL 234
+T+ CAPTNTA+++V +RLLSL TSS+E+ TYGLG+IVL GN+ RM + + L DVFL
Sbjct: 125 KTVVCAPTNTAIVEVTSRLLSLFKTSSSEHSTYGLGNIVLSGNQARMGIKENDVLLDVFL 184
Query: 235 DYRV---KSLLKCLTGWKHDFESMILLLQEPRKQY 266
D R+ SL +GWK ES+I L+ +Y
Sbjct: 185 DERIGILTSLFSPTSGWKQRLESLIDFLENTEAKY 219
>AT5G52090.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:21167432-21169462
REVERSE LENGTH=676
Length = 676
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/227 (45%), Positives = 137/227 (60%), Gaps = 20/227 (8%)
Query: 62 MNLTTNFRIWKALNSQQKGGNMNIIKRVLQPDSNVRGGENCQICLSGENPQASLIIPGII 121
M LTTN RIW AL+++ + K VLQ ++ E + C EN S ++ II
Sbjct: 1 MTLTTNTRIWNALHNEADISTLT--KSVLQANT-----EGTEQCFCSENDGRSDLVLDII 53
Query: 122 RSQNLNESQEDAVSSCVNMINCNHNNT-KLIWGPPGTGKTKTVACLLFSLVKLEARTLTC 180
RS LN SQEDA+ C+ NC H N+ KLIWGPP TGKTKTVA LLF+L+KL +T+ C
Sbjct: 54 RSTKLNSSQEDAILGCLETRNCTHKNSVKLIWGPPRTGKTKTVATLLFALLKLRCKTVVC 113
Query: 181 APTNTAVIQVATRLLSLV--TSSNEYETYGLGDIVLFGNKTRMKVDSYEG-LEDVFLDYR 237
APTNTA++QV +RLLSL S+ E TY LG+I+L GN+ RM ++ + L DVFLD R
Sbjct: 114 APTNTAIVQVTSRLLSLFKENSTAENATYRLGNIILSGNRDRMGINKNDHVLLDVFLDER 173
Query: 238 VKSLLKC---LTGWKHDFESMILLLQEPRKQYLLLHGNEKGLVSLEE 281
+ L K +GW ES+I L+ P +Y E+ + LEE
Sbjct: 174 IGKLGKLFSPFSGWMQRLESLIQFLENPEGKY------ERHVYELEE 214
>AT5G37150.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:14701330-14704562
FORWARD LENGTH=839
Length = 839
Score = 172 bits (435), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 115/274 (41%), Positives = 159/274 (58%), Gaps = 31/274 (11%)
Query: 2 ITNIRPQSVDDLNRPGSYYNITYVRGSKHPFTDKVSVLSSKCIEVSDLRSNHNKLYAIYL 61
+T +P+ ++DLN + YV S K+SV S+ I + N + ++L
Sbjct: 117 LTMDKPRRINDLNP----LLLAYVFSSDGDL--KISVHLSRSISPLE-----NYSFGVFL 165
Query: 62 MNLTTNFRIWKALNSQQKGGNMNIIKRVLQPDS--NVRGGENCQICLSGENPQASLIIPG 119
M LTTN RIW AL+++ + K VLQ ++ NV + + G+ +
Sbjct: 166 MTLTTNTRIWNALHNE--AAISTLTKSVLQANTVNNV-----FVLKMMGD----LTLFLD 214
Query: 120 IIRSQNLNESQEDAVSSCVNMINCNHNNT-KLIWGPPGTGKTKTVACLLFSLVKLEARTL 178
IIRS LN SQEDA+ C+ NC H N+ KLIWGPPGTGKTKTVA LLF+L+KL +T+
Sbjct: 215 IIRSTKLNSSQEDAILGCLETRNCTHKNSVKLIWGPPGTGKTKTVATLLFALLKLRCKTV 274
Query: 179 TCAPTNTAVIQVATRLLSLV--TSSNEYETYGLGDIVLFGNKTRMKVDSYEG-LEDVFLD 235
CAPTNTA++QVA+RLLSL S++E TY LG+I+L GN+ RM + + L DVFLD
Sbjct: 275 VCAPTNTAIVQVASRLLSLFKENSTSENATYRLGNIILSGNRDRMGIHKNDHVLLDVFLD 334
Query: 236 YRVKSLLKC---LTGWKHDFESMILLLQEPRKQY 266
R+ L K +GW ES+I L+ P +Y
Sbjct: 335 ERIGKLGKLFSPFSGWMQRLESLIQFLENPEGKY 368
>AT4G05540.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:2818776-2821065
REVERSE LENGTH=689
Length = 689
Score = 167 bits (424), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 114/271 (42%), Positives = 160/271 (59%), Gaps = 29/271 (10%)
Query: 10 VDDLNRPGSYYNITYVRGSKHPFTDKVSVLSSKCIEVSDLRSNHNKLYAIYLMNLTTNFR 69
VDDLN Y + G + F SV SSK I + + S + + IYL TTN R
Sbjct: 11 VDDLNPLILAY--VFSVGDELHF----SVHSSKSISIDEQYSFRSGFFLIYL---TTNTR 61
Query: 70 IWKALNSQQKGGNMNIIKRVLQPDSNVRGGENCQICLSGENPQASLIIPGIIRSQNLNES 129
IWKAL++ GN+++IK VLQ ++ + + +S N ++ IIRS NLN S
Sbjct: 62 IWKALHNGD--GNLSLIKSVLQANT-----ADTEQSVSSRNWGNHVL--DIIRSANLNSS 112
Query: 130 QEDAVSSCVNMINC-NHNNTKLIWGPPGTGKTKTVACLLFSLVKLEARTLTCAPTNTAVI 188
QE A+ +C+ + + KLIWGPPGTG TKTVA LLF+L+ L +T+ C PTNTAV+
Sbjct: 113 QESAILACLETREIRDKTSVKLIWGPPGTGNTKTVATLLFALLSLSCKTVVCTPTNTAVV 172
Query: 189 QVATRLLSLV--TSSNEYETYGLGDIVLFGNKTRMKVDSY--EGLEDVFLDYRVKSLLKC 244
VA+RLL+L +SS E+ TYGLG+IVL GN+ RM +D + L +VFLD R+ L +
Sbjct: 173 AVASRLLALFKESSSTEHSTYGLGNIVLVGNRVRMGIDERGNDDLLNVFLDDRISKLGEL 232
Query: 245 LT---GWKHDFESMILLLQEPR---KQYLLL 269
+ W+ E++I +L+ K+YLLL
Sbjct: 233 FSPSNEWERSLEAVIDILENAESSYKKYLLL 263
>AT5G37160.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:14705426-14708376
FORWARD LENGTH=871
Length = 871
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 111/297 (37%), Positives = 156/297 (52%), Gaps = 46/297 (15%)
Query: 2 ITNIRPQSVDDLNRPGSYYNITYVRGSKHPFTDKVSVLSSKCIEVSDLRSNHNKLYAIYL 61
+T RP+ +DDL+ P + V G K+SV S+ I S+ H ++L
Sbjct: 134 LTEERPR-IDDLD-PLLLGYVFSVYGDS-----KISVHFSRSISQSE---KHTFCTGVFL 183
Query: 62 MNLTTNFRIWKALNSQQKGGNMNIIKRVLQPDSNVRGGENCQICLSGENPQASLIIPGII 121
+N+TTN RIW AL+ + + +I+ VLQ D++ E C C + + S + II
Sbjct: 184 INITTNTRIWNALH--KDAADSTLIQSVLQEDAS--ATEQCFSCENDVDGSDSDRVVDII 239
Query: 122 RSQNLNESQEDAVSSCVNMINCNHNNT-KLIWGPPGTGKTKTVACLLFSLVKLEARTLTC 180
RS LN SQE A+ + NC H + KLIWGPPGTGKTKTVA LL +L++L+ +T+ C
Sbjct: 240 RSAKLNSSQEAAILGFLKTRNCKHKESVKLIWGPPGTGKTKTVATLLSTLMQLKCKTVVC 299
Query: 181 APTNTAVIQVATRLLSLV----------------------------TSSNEYETYGLGDI 212
APTNT ++ VA+RLLSL TS E TYG+G+I
Sbjct: 300 APTNTTIVAVASRLLSLSKETIVCAPTNSAIAEVVSRFEFSTLFYGTSILERTTYGMGNI 359
Query: 213 VLFGNKTRMKVDSYEGLEDVFLDYRVKSLLKCL---TGWKHDFESMILLLQEPRKQY 266
VL GN+ RM + S + L +VF + RV L + GWK ES+I L+ +Y
Sbjct: 360 VLSGNRERMGITSNKVLLNVFFNDRVSKLGRLFLSTCGWKKRLESIIDFLENTETKY 416
>AT5G37030.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:14634614-14636939
REVERSE LENGTH=638
Length = 638
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/184 (45%), Positives = 114/184 (61%), Gaps = 16/184 (8%)
Query: 82 NMNIIKRVLQPDSNVRGGENCQICLS-GENPQASLIIPGIIRSQNLNESQEDAVSSCVNM 140
N ++I+ VLQP N G E + G+N + IIRS LN SQE A+ SC+
Sbjct: 167 NFDLIQSVLQP--NTAGMEPIVSSRTWGQN------VLDIIRSSKLNSSQEAAILSCLET 218
Query: 141 INCNHNNT-KLIWGPPGTGKTKTVACLLFSLVKLEARTLTCAPTNTAVIQVATRLLSLVT 199
+ NH N+ KLIWGP KTKTVA LL L+KL +T+ CAPTNTA+++V +RLL+L
Sbjct: 219 RDSNHKNSVKLIWGPL---KTKTVATLLLVLLKLRCKTVVCAPTNTAIVEVTSRLLALSN 275
Query: 200 SSNEYETYGLGDIVLFGNKTRMKVDSYEGLEDVFLDYRVKSLLKCL---TGWKHDFESMI 256
+E+ TYGLG+I L GN+ RM++ + L +VFLD+R+ L K GWK ES+I
Sbjct: 276 KYSEHATYGLGNIFLAGNQKRMRIKDTDYLRNVFLDHRISKLRKLFLSTCGWKQSLESII 335
Query: 257 LLLQ 260
LL+
Sbjct: 336 DLLE 339
>AT2G03270.1 | Symbols: | DNA-binding protein, putative |
chr2:994071-995990 FORWARD LENGTH=639
Length = 639
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 124 QNLNESQEDAVSSCVNMINCNHNNTKLIWGPPGTGKTKTVACLLFSLVKLEARTLTCAPT 183
+NL++SQ+DA++ ++ + L+ GPPGTGKT TV ++ VK ++ L CA +
Sbjct: 188 KNLDQSQKDAITKALS-----SKDVFLLHGPPGTGKTTTVVEIVLQEVKRGSKILACAAS 242
Query: 184 NTAVIQVATRLL 195
N AV + RL+
Sbjct: 243 NIAVDNIVERLV 254
>AT5G47010.1 | Symbols: UPF1, LBA1, ATUPF1 | RNA helicase, putative
| chr5:19072009-19078856 FORWARD LENGTH=1254
Length = 1254
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 10/79 (12%)
Query: 117 IPGIIRSQNLNESQEDAVSSCVNMINCNHNNTKLIWGPPGTGKTKTVACLLFSLVKL-EA 175
+PG+ LN SQ +AV S + LI GPPGTGKT T A +++ + K +
Sbjct: 483 VPGL---PELNASQVNAVKSVL------QKPISLIQGPPGTGKTVTSAAIVYHMAKQGQG 533
Query: 176 RTLTCAPTNTAVIQVATRL 194
+ L CAP+N AV Q+A ++
Sbjct: 534 QVLVCAPSNVAVDQLAEKI 552