Miyakogusa Predicted Gene

Lj0g3v0158719.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0158719.1 Non Chatacterized Hit- tr|I1KNY4|I1KNY4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.35674 PE,45.52,3e-19,
,CUFF.9814.1
         (165 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G08330.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   141   2e-34
AT4G08330.2 | Symbols:  | unknown protein. | chr4:5255384-525652...   125   1e-29

>AT4G08330.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: plasma membrane;
           EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14
           growth stages; BEST Arabidopsis thaliana protein match
           is: unknown protein (TAIR:AT2G17705.1); Has 98 Blast
           hits to 98 proteins in 13 species: Archae - 0; Bacteria
           - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0;
           Other Eukaryotes - 0 (source: NCBI BLink). |
           chr4:5255384-5256525 REVERSE LENGTH=164
          Length = 164

 Score =  141 bits (355), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/132 (54%), Positives = 89/132 (67%), Gaps = 5/132 (3%)

Query: 24  RDVHYSCGTCGYELXXXXXXXXXXXXXXTKYGKSIKRGIIPFFNIDDSRFTQVDEIECAP 83
           R V+YSCG+CGYEL              +KYGKS+K GII FFNID+ RF+QVDE +C P
Sbjct: 34  RHVNYSCGSCGYELNLSSTNRITSTIG-SKYGKSMKSGIISFFNIDEGRFSQVDEFQCMP 92

Query: 84  HFSKHSWGLFRRKTKLLCRKCCNYIGNAYDGYTSSSFPLVVSNGTESSPAATESPNQAKY 143
           HFS++SWGLFR +TKLLCRKC NYIGNA     +  + LV  N   S P +    +  KY
Sbjct: 93  HFSRYSWGLFRHRTKLLCRKCNNYIGNASQ-EKAPEYALVTQN---SDPTSPRIGSVTKY 148

Query: 144 NIRIRALQPSSS 155
           +IRIR+LQPSS+
Sbjct: 149 DIRIRSLQPSSA 160


>AT4G08330.2 | Symbols:  | unknown protein. | chr4:5255384-5256525
           REVERSE LENGTH=153
          Length = 153

 Score =  125 bits (314), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 76/104 (73%), Gaps = 4/104 (3%)

Query: 52  TKYGKSIKRGIIPFFNIDDSRFTQVDEIECAPHFSKHSWGLFRRKTKLLCRKCCNYIGNA 111
           +KYGKS+K GII FFNID+ RF+QVDE +C PHFS++SWGLFR +TKLLCRKC NYIGNA
Sbjct: 50  SKYGKSMKSGIISFFNIDEGRFSQVDEFQCMPHFSRYSWGLFRHRTKLLCRKCNNYIGNA 109

Query: 112 YDGYTSSSFPLVVSNGTESSPAATESPNQAKYNIRIRALQPSSS 155
                +  + LV  N   S P +    +  KY+IRIR+LQPSS+
Sbjct: 110 -SQEKAPEYALVTQN---SDPTSPRIGSVTKYDIRIRSLQPSSA 149