Miyakogusa Predicted Gene

Lj0g3v0131509.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0131509.2 Non Characterized Hit- tr|I1JKD2|I1JKD2_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,94.31,0,SRP54,Signal
recognition particle, SRP54 subunit, GTPase domain; SRP54_N,Signal
recognition particle,CUFF.8000.2
         (321 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g032340.1 | signal recognition particle receptor FtsY | HC...   463   e-131
Medtr8g032480.1 | signal recognition particle protein | HC | chr...   295   3e-80
Medtr7g104890.1 | signal recognition particle 54 kDa protein | H...   130   2e-30
Medtr7g104890.2 | signal recognition particle 54 kDa protein | H...   129   3e-30
Medtr2g104050.1 | signal recognition particle 54 kDa protein | H...   103   2e-22
Medtr4g010050.1 | signal recognition particle 54 kDa protein | H...   101   1e-21
Medtr4g130770.1 | signal recognition particle receptor protein, ...    99   4e-21
Medtr7g085470.1 | signal recognition particle protein | LC | chr...    70   3e-12

>Medtr8g032340.1 | signal recognition particle receptor FtsY | HC |
           chr8:12218070-12210399 | 20130731
          Length = 371

 Score =  463 bits (1192), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 240/287 (83%), Positives = 255/287 (88%), Gaps = 10/287 (3%)

Query: 41  LYWNLSDTDRVLDELEEALLVSDFGPRITVKIVENLRVDILSGKLKSGAEIKEALKKNVL 100
           LYWNLSDTD+VLDELEEALLVSDFGP+IT+KIVENLR DILSGKLKSG+EIKEALKKNVL
Sbjct: 89  LYWNLSDTDKVLDELEEALLVSDFGPKITIKIVENLREDILSGKLKSGSEIKEALKKNVL 148

Query: 101 ELLTTKGSKTELQLGYRKPAXXXXXXXXXXXKTTSLGKLAYRLKNEGAKILMAAGDTFRA 160
           +LL+ KGSKTELQLGYRKPA           KTTSLGKLAYRLKN GAKIL+AAGDTFRA
Sbjct: 149 DLLSNKGSKTELQLGYRKPAVIMIVGVNGGGKTTSLGKLAYRLKNGGAKILLAAGDTFRA 208

Query: 161 AASDQLEIWAERTGCEIVVAETEKAKASSVLSQAVKKGK------ELGYDIVLCDTSGRL 214
           AASDQLEIWAERTGCEIVVAE+EK+KAS+VLSQAVK+ K       +G  ++    SG L
Sbjct: 209 AASDQLEIWAERTGCEIVVAESEKSKASAVLSQAVKRRKRARLYISIGVHVIF---SG-L 264

Query: 215 HTNYSLMEELISCKKAVAKVVPGAPNEILLVLDGTTGLNMLPQAREFNEVVGVTGLILTK 274
           HTNY LMEELISCKKAVAKVV GAPNEILLVLDGTTGLNMLPQAREFNEVVGVTGLILTK
Sbjct: 265 HTNYRLMEELISCKKAVAKVVAGAPNEILLVLDGTTGLNMLPQAREFNEVVGVTGLILTK 324

Query: 275 LDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAETFVNAIFM 321
           LDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAE FVNAIF+
Sbjct: 325 LDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFL 371


>Medtr8g032480.1 | signal recognition particle protein | HC |
           chr8:12458856-12456172 | 20130731
          Length = 196

 Score =  295 bits (756), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 152/195 (77%), Positives = 166/195 (85%), Gaps = 10/195 (5%)

Query: 133 TTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAETEKAKASSVLS 192
           T  +    +   ++  +IL+AAGDTFRAAASDQLEIWAERTGCEIVVAE+EK+KAS+VLS
Sbjct: 6   TNKIFHAHFSFSSKFYQILLAAGDTFRAAASDQLEIWAERTGCEIVVAESEKSKASAVLS 65

Query: 193 QAVKKGK------ELGYDIVLCDTSGRLHTNYSLMEELISCKKAVAKVVPGAPNEILLVL 246
           QAVK+ K       +G  ++    SG LHTNY LMEELISCKKAVAKVV GAPNEILLVL
Sbjct: 66  QAVKRRKRARLYISIGVHVIF---SG-LHTNYRLMEELISCKKAVAKVVAGAPNEILLVL 121

Query: 247 DGTTGLNMLPQAREFNEVVGVTGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVED 306
           DGTTGLNMLPQAREFNEVVGVTGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVED
Sbjct: 122 DGTTGLNMLPQAREFNEVVGVTGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVED 181

Query: 307 LQPFDAETFVNAIFM 321
           LQPFDAE FVNAIF+
Sbjct: 182 LQPFDAEAFVNAIFL 196


>Medtr7g104890.1 | signal recognition particle 54 kDa protein | HC |
           chr7:42524740-42517179 | 20130731
          Length = 553

 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/271 (32%), Positives = 134/271 (49%), Gaps = 9/271 (3%)

Query: 52  LDELEEALLVSDFGPRITVKIVENLRVDILSGKLKSGAEIKEALKKNVLELLTT--KGSK 109
           + ++  ALL +D    +  + V+++    +   +  G +  + L K V + L     G  
Sbjct: 97  MRDIRRALLEADVSLPVVRRFVQSVTDQAVGVGVTRGVKPDQQLVKIVHDELVQLMGGEV 156

Query: 110 TELQLGYRKPAXXXXXXXXXXXKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIW 169
           +EL      P            KTT   KLA   K +G   ++ AGD +R AA DQL I 
Sbjct: 157 SELTFAKTGPTVILLAGLQGVGKTTVCAKLANYFKKQGKSCMLVAGDVYRPAAIDQLTIL 216

Query: 170 AERTGCEIVVAETEKAKASSVLSQAVKKGKELGYDIVLCDTSGRLHTNYSLMEELISCKK 229
            ++    +  A T+  K S +  Q  ++ K+   D+V+ DT+GRL  + ++M+EL   K+
Sbjct: 217 GKQVDVPVYTAGTD-VKPSDIAKQGFEEAKKKKIDVVIVDTAGRLQIDKAMMDELKDVKR 275

Query: 230 AVAKVVPGAPNEILLVLDGTTGLNMLPQAREFNEVVGVTGLILTKLDGSARGGCVVSVVD 289
            +       P E+LLV+D  TG         FN  +G+TG ILTKLDG +RGG  +SV +
Sbjct: 276 VLN------PTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKE 329

Query: 290 ELGIPVKFVGVGEGVEDLQPFDAETFVNAIF 320
             G P+K VG GE +EDL+PF  +     I 
Sbjct: 330 VSGKPIKLVGRGERMEDLEPFYPDRMAGRIL 360


>Medtr7g104890.2 | signal recognition particle 54 kDa protein | HC |
           chr7:42524740-42517179 | 20130731
          Length = 420

 Score =  129 bits (324), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/214 (35%), Positives = 110/214 (51%), Gaps = 7/214 (3%)

Query: 107 GSKTELQLGYRKPAXXXXXXXXXXXKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQL 166
           G  +EL      P            KTT   KLA   K +G   ++ AGD +R AA DQL
Sbjct: 21  GEVSELTFAKTGPTVILLAGLQGVGKTTVCAKLANYFKKQGKSCMLVAGDVYRPAAIDQL 80

Query: 167 EIWAERTGCEIVVAETEKAKASSVLSQAVKKGKELGYDIVLCDTSGRLHTNYSLMEELIS 226
            I  ++    +  A T+  K S +  Q  ++ K+   D+V+ DT+GRL  + ++M+EL  
Sbjct: 81  TILGKQVDVPVYTAGTD-VKPSDIAKQGFEEAKKKKIDVVIVDTAGRLQIDKAMMDELKD 139

Query: 227 CKKAVAKVVPGAPNEILLVLDGTTGLNMLPQAREFNEVVGVTGLILTKLDGSARGGCVVS 286
            K+ +       P E+LLV+D  TG         FN  +G+TG ILTKLDG +RGG  +S
Sbjct: 140 VKRVLN------PTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALS 193

Query: 287 VVDELGIPVKFVGVGEGVEDLQPFDAETFVNAIF 320
           V +  G P+K VG GE +EDL+PF  +     I 
Sbjct: 194 VKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRIL 227


>Medtr2g104050.1 | signal recognition particle 54 kDa protein | HC |
           chr2:44822528-44828469 | 20130731
          Length = 470

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 135/275 (49%), Gaps = 17/275 (6%)

Query: 52  LDELEEALLVSDFGPRITVKIVENLRVDILS----GKLKSGAEIKEALKKNVLELLTT-- 105
           L+E+  ALL SD    +  +++ +++++I +     +L +G   ++ +++ V + L    
Sbjct: 32  LNEINRALLQSD----VRFELIRDMQINIKNIVNLEQLAAGHNKRKIIQQAVFDELCRML 87

Query: 106 KGSKTELQLGYRKPAXXXXXXXXXXXKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQ 165
              K        K +           KTT+  K A+  + +G K  +   DTFRA A DQ
Sbjct: 88  NPGKPSFVPKREKTSVVMFVGLQGSGKTTTCTKYAHCYQKKGWKPALVCADTFRAGAFDQ 147

Query: 166 LEIWAERTGCEIVVAETEKAKASSVLSQAVKKGKELGYDIVLCDTSGRLHTNYSLMEELI 225
           L+  A +       +  E +    +  + V++ KE  +D+++ DTSGR     SL EE+ 
Sbjct: 148 LKQNATKAKIPFYGSYME-SDPVKIAVEGVERFKEEDHDLIIVDTSGRHKQEASLFEEMR 206

Query: 226 SCKKAVAKVVPGAPNEILLVLDGTTGLNMLPQAREFNEVVGVTGLILTKLDGSARGGCVV 285
              +A        P+ ++ V+D + G     QA+ F ++V V  +I+TK+DG A+GG  +
Sbjct: 207 QLSEATK------PDLVIFVMDSSIGQAAFNQAQAFKQIVAVGAVIITKMDGHAKGGGSL 260

Query: 286 SVVDELGIPVKFVGVGEGVEDLQPFDAETFVNAIF 320
           S V     PV F+G GE ++  + F+ + FV+ + 
Sbjct: 261 SAVAATKSPVIFIGTGEHMDQFEVFEVQPFVSRLL 295


>Medtr4g010050.1 | signal recognition particle 54 kDa protein | HC |
           chr4:2207891-2201607 | 20130731
          Length = 496

 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 128/274 (46%), Gaps = 9/274 (3%)

Query: 49  DRVLDELEEALLVSDFGPRITVKIVENLRVDILSGKLKSGAEIKEALKKNVLELLTT--K 106
           +  L+E+  ALL SD   ++   +  N++  +    L +G   +  +++ V   L     
Sbjct: 29  NECLNEITRALLQSDVQFKLVRDMQTNIKKIVNLDDLAAGHNKRRIIQQAVFNELCNILD 88

Query: 107 GSKTELQLGYRKPAXXXXXXXXXXXKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQL 166
             K        K +           KTT+  K A+  + +G K  +   DTFRA A DQL
Sbjct: 89  PGKPAFTPKKGKASVVMFVGLQGSGKTTTCTKYAFYHQKKGWKPALVCADTFRAGAFDQL 148

Query: 167 EIWAERTGCEIVVAETEKAKASSVLSQAVKKGKELGYDIVLCDTSGRLHTNYSLMEELIS 226
           +  A +       +  E +    +  + V++ K+   D+++ DTSGR     +L EE+  
Sbjct: 149 KQNATKAKIPFYGSYME-SDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEAALFEEMRQ 207

Query: 227 CKKAVAKVVPGAPNEILLVLDGTTGLNMLPQAREFNEVVGVTGLILTKLDGSARGGCVVS 286
             +A        P+ ++ V+D + G     QA+ F + V V  +I+TK+DG A+GG  +S
Sbjct: 208 VSEATK------PDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALS 261

Query: 287 VVDELGIPVKFVGVGEGVEDLQPFDAETFVNAIF 320
            V     PV F+G GE +++ + FD + FV+ + 
Sbjct: 262 AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295


>Medtr4g130770.1 | signal recognition particle receptor protein,
           putative | HC | chr4:54489810-54494349 | 20130731
          Length = 631

 Score = 99.4 bits (246), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 142/296 (47%), Gaps = 29/296 (9%)

Query: 46  SDTDRVLDELEEALLVSDFGPRITVKIVENLRVDILSGKLKS----GAEIKEALKKNVLE 101
           SD +  L  L++ L+  +    I  K+ E++   +   KL S     + ++ A++  ++ 
Sbjct: 343 SDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEDALVR 402

Query: 102 LLTTKGSKTELQLGY-----RKPAXXXXXXXXXXXKTTSLGKLAYRLKNEGAKILMAAGD 156
           +LT + S   L+  +     RKP            K+T+L K+AY L+     ++MAA D
Sbjct: 403 ILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHNVNVMMAACD 462

Query: 157 TFRAAASDQLEIWAERTGCEIVVAETEKAKASSVLSQAVKKGKELGYDIVLCDTSGRLHT 216
           TFR+ A +QL   A R    I     EK  A  V  +A+++    G D+VL DT+GR+  
Sbjct: 463 TFRSGAVEQLRTHARRLQIPIFEKGYEKDPA-VVAKEAIQEASRNGSDVVLVDTAGRMQD 521

Query: 217 NYSLMEELISCKKAVAKVVP-GAPNEILLVLDGTTGLNMLPQAREFNEVVG--------- 266
           N  LM       +A++K++    P+ +L V +   G + + Q  +FN+ +          
Sbjct: 522 NEPLM-------RALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPTPR 574

Query: 267 -VTGLILTKLDG-SARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAETFVNAIF 320
            + G++LTK D    + G  +S+V   G PV FVG G+   DL+  + ++ V  + 
Sbjct: 575 LIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 630


>Medtr7g085470.1 | signal recognition particle protein | LC |
           chr7:33117310-33115264 | 20130731
          Length = 321

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 20/196 (10%)

Query: 132 KTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQL-EIWAE-RTGCEIVVAETEKAKASS 189
           KTT+  + A   + +G K  +   DT R  A DQL +I+AE    C   V   +  +   
Sbjct: 92  KTTTCAQFANHYQKKGLKTGLVCTDTLRNGAFDQLKQIYAETNIPCYGRVGYCQNCRERC 151

Query: 190 VLSQAVKKGKELGYDIVLCDTSG-RLHTNYSLMEELISCKKAVAKVVPGAPNEILLVLDG 248
              Q          D+++ D SG       +L+EE+    KA        P+ ++LV+DG
Sbjct: 152 GQMQGGN------CDLIIVDVSGGHKQEEDALIEEIHQVSKATK------PDLVILVIDG 199

Query: 249 TTGLNM-----LPQAREFNEVVGVTGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEG 303
             G +      L QA  F + V +  +I++K+DG A GG  +S V      V F+G GE 
Sbjct: 200 NIGQHAFDHRSLKQATAFTQSVDIGAVIVSKMDGYAMGGGSLSAVAATKSSVIFIGTGEH 259

Query: 304 VEDLQPFDAETFVNAI 319
           +++ + F+ + FV+++
Sbjct: 260 MDEFEVFEVKPFVSSL 275