Miyakogusa Predicted Gene

Lj0g3v0131509.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0131509.2 Non Chatacterized Hit- tr|I1JKD2|I1JKD2_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,94.31,0,SRP54,Signal
recognition particle, SRP54 subunit, GTPase domain; SRP54_N,Signal
recognition particle,CUFF.8000.2
         (321 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G45770.1 | Symbols: CPFTSY, FRD4 | signal recognition particl...   468   e-132
AT2G45770.2 | Symbols: CPFTSY | signal recognition particle rece...   461   e-130
AT5G03940.1 | Symbols: FFC, 54CP, CPSRP54, SRP54CP | chloroplast...   137   1e-32
AT1G15310.1 | Symbols: ATHSRP54A, SRP54-1 | signal recognition p...   110   1e-24
AT1G48900.1 | Symbols:  | Signal recognition particle, SRP54 sub...   103   1e-22
AT1G48900.2 | Symbols:  | Signal recognition particle, SRP54 sub...   103   1e-22
AT5G49500.1 | Symbols:  | Signal recognition particle, SRP54 sub...    99   3e-21
AT4G30600.1 | Symbols:  | signal recognition particle receptor a...    99   5e-21

>AT2G45770.1 | Symbols: CPFTSY, FRD4 | signal recognition particle
           receptor protein, chloroplast (FTSY) |
           chr2:18851248-18853402 FORWARD LENGTH=366
          Length = 366

 Score =  468 bits (1205), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/280 (82%), Positives = 255/280 (91%)

Query: 41  LYWNLSDTDRVLDELEEALLVSDFGPRITVKIVENLRVDILSGKLKSGAEIKEALKKNVL 100
           L+WNL++TDRVLDELEEALLVSDFGP+ITV+IVE LR DI+SGKLKSG+EIK+ALK++VL
Sbjct: 86  LFWNLAETDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALKESVL 145

Query: 101 ELLTTKGSKTELQLGYRKPAXXXXXXXXXXXKTTSLGKLAYRLKNEGAKILMAAGDTFRA 160
           E+L  K SKTELQLG+RKPA           KTTSLGKLA+RLKNEG K+LMAAGDTFRA
Sbjct: 146 EMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRA 205

Query: 161 AASDQLEIWAERTGCEIVVAETEKAKASSVLSQAVKKGKELGYDIVLCDTSGRLHTNYSL 220
           AASDQLEIWAERTGCEIVVAE +KAKA++VLS+AVK+GKE GYD+VLCDTSGRLHTNYSL
Sbjct: 206 AASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSL 265

Query: 221 MEELISCKKAVAKVVPGAPNEILLVLDGTTGLNMLPQAREFNEVVGVTGLILTKLDGSAR 280
           MEELI+CKKAV K+V GAPNEILLVLDG TGLNMLPQAREFNEVVG+TGLILTKLDGSAR
Sbjct: 266 MEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSAR 325

Query: 281 GGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAETFVNAIF 320
           GGCVVSVV+ELGIPVKF+GVGE VEDLQPFD E FVNAIF
Sbjct: 326 GGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIF 365


>AT2G45770.2 | Symbols: CPFTSY | signal recognition particle
           receptor protein, chloroplast (FTSY) |
           chr2:18851248-18853402 FORWARD LENGTH=373
          Length = 373

 Score =  461 bits (1185), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/287 (80%), Positives = 255/287 (88%), Gaps = 7/287 (2%)

Query: 41  LYWNLSDTDRVLDELEEALLVSDFGPRITVKIVENLRVDILSGKLKSGAEIKEALKKNVL 100
           L+WNL++TDRVLDELEEALLVSDFGP+ITV+IVE LR DI+SGKLKSG+EIK+ALK++VL
Sbjct: 86  LFWNLAETDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALKESVL 145

Query: 101 ELLTTKGSKTELQLGYRKPAXXXXXXXXXXXKTTSL-------GKLAYRLKNEGAKILMA 153
           E+L  K SKTELQLG+RKPA           KTTSL       GKLA+RLKNEG K+LMA
Sbjct: 146 EMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLDSGFCFSGKLAHRLKNEGTKVLMA 205

Query: 154 AGDTFRAAASDQLEIWAERTGCEIVVAETEKAKASSVLSQAVKKGKELGYDIVLCDTSGR 213
           AGDTFRAAASDQLEIWAERTGCEIVVAE +KAKA++VLS+AVK+GKE GYD+VLCDTSGR
Sbjct: 206 AGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGR 265

Query: 214 LHTNYSLMEELISCKKAVAKVVPGAPNEILLVLDGTTGLNMLPQAREFNEVVGVTGLILT 273
           LHTNYSLMEELI+CKKAV K+V GAPNEILLVLDG TGLNMLPQAREFNEVVG+TGLILT
Sbjct: 266 LHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILT 325

Query: 274 KLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAETFVNAIF 320
           KLDGSARGGCVVSVV+ELGIPVKF+GVGE VEDLQPFD E FVNAIF
Sbjct: 326 KLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIF 372


>AT5G03940.1 | Symbols: FFC, 54CP, CPSRP54, SRP54CP | chloroplast
           signal recognition particle 54 kDa subunit |
           chr5:1060265-1063257 REVERSE LENGTH=564
          Length = 564

 Score =  137 bits (345), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/271 (33%), Positives = 137/271 (50%), Gaps = 9/271 (3%)

Query: 52  LDELEEALLVSDFGPRITVKIVENLRVDILSGKLKSGAEIKEALKKNVLELLT--TKGSK 109
           + ++  ALL +D    +  + V+++    +   +  G +  + L K V + L     G  
Sbjct: 107 MRDIRRALLEADVSLPVVRRFVQSVSDQAVGMGVIRGVKPDQQLVKIVHDELVKLMGGEV 166

Query: 110 TELQLGYRKPAXXXXXXXXXXXKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIW 169
           +ELQ     P            KTT   KLA  LK +G   ++ AGD +R AA DQL I 
Sbjct: 167 SELQFAKSGPTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAIDQLVIL 226

Query: 170 AERTGCEIVVAETEKAKASSVLSQAVKKGKELGYDIVLCDTSGRLHTNYSLMEELISCKK 229
            E+ G  +  A T+  K + +  Q +K+ K+   D+V+ DT+GRL  +  +M+EL   KK
Sbjct: 227 GEQVGVPVYTAGTD-VKPADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKGMMDELKDVKK 285

Query: 230 AVAKVVPGAPNEILLVLDGTTGLNMLPQAREFNEVVGVTGLILTKLDGSARGGCVVSVVD 289
            +       P E+LLV+D  TG         FN  +G+TG ILTKLDG +RGG  +SV +
Sbjct: 286 FLN------PTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKE 339

Query: 290 ELGIPVKFVGVGEGVEDLQPFDAETFVNAIF 320
             G P+K VG GE +EDL+PF  +     I 
Sbjct: 340 VSGKPIKLVGRGERMEDLEPFYPDRMAGRIL 370


>AT1G15310.1 | Symbols: ATHSRP54A, SRP54-1 | signal recognition
           particle 54 kDa subunit | chr1:5269173-5271947 REVERSE
           LENGTH=479
          Length = 479

 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 130/273 (47%), Gaps = 13/273 (4%)

Query: 52  LDELEEALLVSDFGPRITVKIVENLRVDILSGKLKSGAE----IKEALKKNVLELLTTKG 107
           L+E+  ALL SD    +  K+  N++  +    L +G      I++A+ K +  +L    
Sbjct: 32  LNEITRALLQSDVSFGLVEKMQTNIKKIVNLDDLAAGHNKRLIIEQAIFKELCRMLDP-- 89

Query: 108 SKTELQLGYRKPAXXXXXXXXXXXKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLE 167
            K        KP+           KTT+  K AY  + +G K  +   DTFRA A DQL+
Sbjct: 90  GKPAFAPKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKAALVCADTFRAGAFDQLK 149

Query: 168 IWAERTGCEIVVAETEKAKASSVLSQAVKKGKELGYDIVLCDTSGRLHTNYSLMEELISC 227
             A +       + TE +    +  + V + K+   D+++ DTSGR     SL EE+   
Sbjct: 150 QNATKAKIPFYGSYTE-SDPVKIAVEGVDRFKKEKCDLIIVDTSGRHKQAASLFEEMRQV 208

Query: 228 KKAVAKVVPGAPNEILLVLDGTTGLNMLPQAREFNEVVGVTGLILTKLDGSARGGCVVSV 287
            +A        P+ ++ V+D + G     QA  F E V V  +I+TK+DG A+GG  +S 
Sbjct: 209 AEATE------PDLVIFVMDSSIGQAAFEQAEAFKETVSVGAVIITKMDGHAKGGGALSA 262

Query: 288 VDELGIPVKFVGVGEGVEDLQPFDAETFVNAIF 320
           V     PV F+G GE +++ + FD + FV+ + 
Sbjct: 263 VAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295


>AT1G48900.1 | Symbols:  | Signal recognition particle, SRP54
           subunit protein | chr1:18084972-18087743 REVERSE
           LENGTH=495
          Length = 495

 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 98/189 (51%), Gaps = 7/189 (3%)

Query: 132 KTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAETEKAKASSVL 191
           KTT+  K AY  + +G K  +   DTFRA A DQL+  A +       + TE +    + 
Sbjct: 114 KTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE-SDPVKIA 172

Query: 192 SQAVKKGKELGYDIVLCDTSGRLHTNYSLMEELISCKKAVAKVVPGAPNEILLVLDGTTG 251
            + V   K+   D+++ DTSGR     SL EE+    +A        P+ ++ V+D + G
Sbjct: 173 VEGVDTFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEATK------PDLVIFVMDSSIG 226

Query: 252 LNMLPQAREFNEVVGVTGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFD 311
                QA+ F + V V  +I+TK+DG A+GG  +S V     PV F+G GE +++ + FD
Sbjct: 227 QAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFD 286

Query: 312 AETFVNAIF 320
            + FV+ + 
Sbjct: 287 VKPFVSRLL 295


>AT1G48900.2 | Symbols:  | Signal recognition particle, SRP54
           subunit protein | chr1:18085031-18087743 REVERSE
           LENGTH=431
          Length = 431

 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 97/186 (52%), Gaps = 7/186 (3%)

Query: 132 KTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAETEKAKASSVL 191
           KTT+  K AY  + +G K  +   DTFRA A DQL+  A +       + TE +    + 
Sbjct: 114 KTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE-SDPVKIA 172

Query: 192 SQAVKKGKELGYDIVLCDTSGRLHTNYSLMEELISCKKAVAKVVPGAPNEILLVLDGTTG 251
            + V   K+   D+++ DTSGR     SL EE+    +A        P+ ++ V+D + G
Sbjct: 173 VEGVDTFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEATK------PDLVIFVMDSSIG 226

Query: 252 LNMLPQAREFNEVVGVTGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFD 311
                QA+ F + V V  +I+TK+DG A+GG  +S V     PV F+G GE +++ + FD
Sbjct: 227 QAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFD 286

Query: 312 AETFVN 317
            + FV+
Sbjct: 287 VKPFVS 292


>AT5G49500.1 | Symbols:  | Signal recognition particle, SRP54
           subunit protein | chr5:20077556-20080206 REVERSE
           LENGTH=497
          Length = 497

 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 94/178 (52%), Gaps = 7/178 (3%)

Query: 143 LKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAETEKAKASSVLSQAVKKGKELG 202
           ++ +G K  +   DTFRA A DQL+  A ++      + T  +    +  + V + K+  
Sbjct: 127 IRRKGYKPALVCADTFRAGAFDQLKQNATKSKIPYYGSYT-GSDPVKIAVEGVDRFKKEN 185

Query: 203 YDIVLCDTSGRLHTNYSLMEELISCKKAVAKVVPGAPNEILLVLDGTTGLNMLPQAREFN 262
            D+++ DTSGR     SL EE+    +A        P+ ++ V+D + G     QAR F 
Sbjct: 186 CDLIIVDTSGRHKQQASLFEEMRQISEATK------PDLVIFVMDSSIGQTAFEQARAFK 239

Query: 263 EVVGVTGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAETFVNAIF 320
           + V V  +I+TK+DG A+GG  +S V     PV F+G GE +++ + FDA+ FV+ + 
Sbjct: 240 QTVAVGAVIITKMDGHAKGGGTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRLL 297


>AT4G30600.1 | Symbols:  | signal recognition particle receptor
           alpha subunit family protein | chr4:14938142-14940600
           REVERSE LENGTH=634
          Length = 634

 Score = 98.6 bits (244), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 142/300 (47%), Gaps = 31/300 (10%)

Query: 44  NLSDTD--RVLDELEEALLVSDFGPRITVKIVENLRVDILSGKLKS----GAEIKEALKK 97
           NL  TD    L  L+E L+  +    I  K+ E++   +   KL S     + ++ A++ 
Sbjct: 342 NLERTDLGPALKALKERLMTKNVAEEIAEKLCESVEASLEGKKLSSFTRISSTVQAAMED 401

Query: 98  NVLELLTTKGSKTELQLGY-----RKPAXXXXXXXXXXXKTTSLGKLAYRLKNEGAKILM 152
            ++ +LT + S   L+  +     RKP            K+T+L K+AY L+     ++M
Sbjct: 402 ALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHKVSVMM 461

Query: 153 AAGDTFRAAASDQLEIWAERTGCEIVVAETEKAKASSVLSQAVKKGKELGYDIVLCDTSG 212
           AA DTFR+ A +QL   A R    I     EK  A  V  +A+++    G D+VL DT+G
Sbjct: 462 AACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPA-VVAKEAIQEATRNGSDVVLVDTAG 520

Query: 213 RLHTNYSLMEELISCKKAVAKVVP-GAPNEILLVLDGTTGLNMLPQAREFNEVVG----- 266
           R+  N  LM       +A++K++    P+ +L V +   G + + Q  +FN+ +      
Sbjct: 521 RMQDNEPLM-------RALSKLINLNQPDLVLFVGEALVGNDAVDQLSKFNQKLSDLSTS 573

Query: 267 -----VTGLILTKLDG-SARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAETFVNAIF 320
                + G++LTK D    + G  +S+V   G PV FVG G+   DL+  + +  V  + 
Sbjct: 574 GNPRLIDGILLTKFDTIDDKVGAALSMVYISGSPVMFVGCGQSYTDLKKLNVKAIVKTLL 633