Miyakogusa Predicted Gene

Lj0g3v0131509.2

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0131509.2 Non Chatacterized Hit- tr|I1JKD2|I1JKD2_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,94.31,0,SRP54,Signal
recognition particle, SRP54 subunit, GTPase domain; SRP54_N,Signal
recognition particle,CUFF.8000.2
         (966 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BW611410 similar to UniRef100_A7PXY2 Cluster: Chromosom...   505   e-142
gnl|LJGI|FS351035 homologue to UniRef100_A7PXY2 Cluster: Chromos...   488   e-137
gnl|LJGI|TC70671 homologue to UniRef100_A7PXY2 Cluster: Chromoso...   232   3e-60

>gnl|LJGI|BW611410 similar to UniRef100_A7PXY2 Cluster: Chromosome chr15 scaffold_37,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr15 scaffold_37, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (29%)
          Length = 475

 Score =  505 bits (255), Expect = e-142
 Identities = 297/315 (94%), Gaps = 16/315 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgctccgccggcccgaccggattcttcacgaaactgggccggttgttgaaggagaaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 atgctccgccggcccgaccggattcttcacgaaactgggccggttgttgaaggagaaggc 220

                                                                       
Query: 61  aaagagcgatgtggagaagttattctctggtttctccaaaacccgcagcaacctcgcn-- 118
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 221 aaagagcgatgtggagaagttattctctggtttctccaaaacccgcagcaacctcgccgt 280

                                                                       
Query: 119 --------------ttctctactggaacctctccgacaccgaccgagtcctcgacgaact 164
                         ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 cgtcgacgagctacttctctactggaacctctccgacaccgaccgagtcctcgacgaact 340

                                                                       
Query: 165 cgaagaggctcttttagtgtctgattttggtccaagaattactgtaaagatagtggagaa 224
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 341 cgaagaggctcttttagtgtctgattttggtccaagaatcactgtaaagatagtggagaa 400

                                                                       
Query: 225 tttgcgtgtggacattttgtcagggaagctcaaatcaggggctgagataaaggaagcact 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tttgcgtgtggacattttgtcagggaagctcaaatcaggggctgagataaaggaagcact 460

                          
Query: 285 gaagaagaatgtttt 299
           |||||||||||||||
Sbjct: 461 gaagaagaatgtttt 475


>gnl|LJGI|FS351035 homologue to UniRef100_A7PXY2 Cluster: Chromosome chr15
           scaffold_37, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr15 scaffold_37, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (22%)
          Length = 645

 Score =  488 bits (246), Expect = e-137
 Identities = 246/246 (100%)
 Strand = Plus / Minus

                                                                       
Query: 721 gagatcctactggttctggatgggactactggtttgaatatgttgccacaagcaagagaa 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gagatcctactggttctggatgggactactggtttgaatatgttgccacaagcaagagaa 550

                                                                       
Query: 781 tttaatgaagttgtgggtgttactggtttaattttgaccaaactggatggttctgctaga 840
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tttaatgaagttgtgggtgttactggtttaattttgaccaaactggatggttctgctaga 490

                                                                       
Query: 841 ggtggctgtgtggttagtgtggttgatgagcttggaatccctgtaaaatttgtgggtgtt 900
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ggtggctgtgtggttagtgtggttgatgagcttggaatccctgtaaaatttgtgggtgtt 430

                                                                       
Query: 901 ggagaaggtgttgaagaccttcagcccttcgatgcagagacttttgtcaatgccattttt 960
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ggagaaggtgttgaagaccttcagcccttcgatgcagagacttttgtcaatgccattttt 370

                 
Query: 961 atgtaa 966
           ||||||
Sbjct: 369 atgtaa 364


>gnl|LJGI|TC70671 homologue to UniRef100_A7PXY2 Cluster: Chromosome chr15
           scaffold_37, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr15 scaffold_37, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (10%)
          Length = 587

 Score =  232 bits (117), Expect = 3e-60
 Identities = 117/117 (100%)
 Strand = Plus / Plus

                                                                       
Query: 850 gtggttagtgtggttgatgagcttggaatccctgtaaaatttgtgggtgttggagaaggt 909
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2   gtggttagtgtggttgatgagcttggaatccctgtaaaatttgtgggtgttggagaaggt 61

                                                                    
Query: 910 gttgaagaccttcagcccttcgatgcagagacttttgtcaatgccatttttatgtaa 966
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  gttgaagaccttcagcccttcgatgcagagacttttgtcaatgccatttttatgtaa 118