Miyakogusa Predicted Gene

Lj0g3v0127979.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0127979.1 tr|B9HXN7|B9HXN7_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_886265 PE=4
SV=1,27.21,9e-19,seg,NULL,NODE_53984_length_1511_cov_28.634018.path1.1
         (348 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G61340.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   178   6e-45
AT1G26650.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    76   4e-14
AT1G69430.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    69   4e-12

>AT5G61340.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G26650.1); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:24662064-24663044 REVERSE LENGTH=326
          Length = 326

 Score =  178 bits (451), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 127/326 (38%), Positives = 181/326 (55%), Gaps = 19/326 (5%)

Query: 20  MDGSGKTLRRSIHCFLQNYHYFTSTAAFLAFPFSASILLSQALVPTSSSLLPQIYNHLRI 79
           M+   K +RRSIH FLQNYH  T TAA +A PFSA +LLSQ   P  SS    ++  L +
Sbjct: 5   MEDPSKIMRRSIHTFLQNYHRVT-TAAAVALPFSAGLLLSQ---PFFSSSSSTLHMRLNM 60

Query: 80  LFDAAGFPSSSQLF---TRKVSQXXXXXXXXXXXXXXXXXXAKASTILALNHHRQNLLPP 136
           LF  AGF SS   F   + K+SQ                  +KA  I  L+++       
Sbjct: 61  LFRGAGFSSSHDFFNILSLKLSQTLSSSLFTLPFSLTFLLLSKAYVIKLLSNNHSADSSS 120

Query: 137 SFNCLIHHYKPILHTYIHNSFLIXXXXXXXXXXXXXXXXXXEGLGYSSPSCTLFLSAATA 196
            F      Y  +L TY+ N F +                  E  G+SS +   FLS ++A
Sbjct: 121 VF------YLRLLKTYVCNFFFLLSANASAFALFFLAYNTLEAFGFSSRNFYTFLSLSSA 174

Query: 197 VVSSVILATALVICNMALIISGMEGHGGYMAILKACVLLRGNTSKALFLALPGNLALAAI 256
           ++ S+I+A A VI N+AL+ S     GGY  ILKAC+L+RG  S A+ LALP NL LA +
Sbjct: 175 IIYSIIIANAFVISNLALVSSPSSSSGGYTNILKACLLIRGRNSTAMALALPTNLGLAGV 234

Query: 257 EALFQFRVVRAYHNVGNSINSWPFMALEGIFIAYLYSISIIIDTIVSCMFYKSC---NMG 313
           EALFQ+RV+R+Y+N    I S   +ALEG FIAYLY++ +++DTIV+ +FY+SC      
Sbjct: 235 EALFQYRVMRSYYNGDRDIIS---IALEGTFIAYLYALFLVLDTIVNFLFYQSCIKNEED 291

Query: 314 SLVDQEDMHFSRIELAEEQNYELGIQ 339
             + +ED +  +I+++E +N ++ I+
Sbjct: 292 QNIGREDEYSIKIQISETENTKIHIK 317


>AT1G26650.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G69430.1); Has 205 Blast hits to 204 proteins
           in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0;
           Fungi - 0; Plants - 205; Viruses - 0; Other Eukaryotes -
           0 (source: NCBI BLink). | chr1:9210335-9211342 FORWARD
           LENGTH=335
          Length = 335

 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 132/295 (44%), Gaps = 19/295 (6%)

Query: 25  KTLRRSIHCFLQNYHYFTSTAAFLAFPFSASILLSQALVPTSSSLLPQIYNHLRILFDAA 84
           + LR ++     N      T A L  P SA +LL   LV    SL+ ++   L ++  ++
Sbjct: 29  EILRETVRILRYNLGALMLTTAVLICPVSA-LLLPNFLV--DQSLVNKLTVKLLLVAKSS 85

Query: 85  GFPSSSQLFTR----KVSQXXXXXXXXXXXXXXXXXXAKASTILALN--HHRQNLLPPSF 138
           G P   Q F +    K ++                  +KA+ + +++  + R+ +    F
Sbjct: 86  GLPL--QPFVKHSCQKFAETAVSSAMCFPVFITVSLLSKAAVVYSVDCSYSREVVDISKF 143

Query: 139 NCLIHH-YKPILHTYIHNSFLIXXXXXXXXXXXXXXXXXXEGLGYSSPSCTLFLSAATAV 197
             ++   ++ ++ TY+    LI                    LG+S P   ++ +    +
Sbjct: 144 LVILQKIWRRVVFTYVWICILIVGCFTFFCVLLVAICSSFSVLGFS-PDFNVYGAMLVGL 202

Query: 198 VSSVILATALVICNMALIISGMEGHGGYMAILKACVLLRGNTSKALFLALPGNLALAAIE 257
             SV+ A A++ICN A++IS +E   G  A+++A  L++G     L + L   L LA +E
Sbjct: 203 AFSVVFANAIIICNTAIVISVLEDVSGLGALMRASDLIKGQIQVGLLMFLGSTLGLAFVE 262

Query: 258 ALFQFRVVRAYHNVGNSINSWPFMALEGIFIAYLYSISIIIDTIVSCMFYKSCNM 312
            LF  RV +  +  G+S   W     EG  +  +YS   +ID+++S +FY SC +
Sbjct: 263 GLFDHRVKKVSYGDGSS-RLW-----EGPLLVLMYSFVTLIDSMMSAVFYFSCRV 311


>AT1G69430.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G26650.1); Has 216 Blast hits to 215 proteins
           in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0;
           Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes -
           0 (source: NCBI BLink). | chr1:26098025-26099077 FORWARD
           LENGTH=350
          Length = 350

 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 77/145 (53%), Gaps = 7/145 (4%)

Query: 180 LGYSSPSCTLFLSAATAVVSSVILATALVICNMALIISGMEGHGGYMAILKACVLLRGNT 239
           LG+S P    + +    +V SV+ A A++ICN  ++IS +E   G  A+++A  L++G T
Sbjct: 202 LGFS-PDFNAYGAILVGLVFSVVFANAIIICNTTIVISILEDVSGPGALVRASDLIKGQT 260

Query: 240 SKALFLALPGNLALAAIEALFQFRVVRAYHNVGNSINSWPFMALEGIFIAYLYSISIIID 299
              L + L   + L  +E LF+ RV    +  G+S   W     EG  +  +YS  ++ID
Sbjct: 261 QVGLLIFLGSTIGLTFVEGLFEHRVKSLSYGDGSS-RLW-----EGPLLVVMYSFVVLID 314

Query: 300 TIVSCMFYKSCNMGSLVDQEDMHFS 324
           T++S +FY SC   S+   E +  S
Sbjct: 315 TMMSAVFYFSCRSYSMEAVEALEAS 339