Miyakogusa Predicted Gene

Lj0g3v0126189.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0126189.1 Non Characterized Hit- tr|I1MV31|I1MV31_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,92.53,0,AIM24,Mitochondrial biogenesis protein AIM24;
TRAP-like,Tryptophan RNA-binding attenuator protein-li,CUFF.7579.1
         (314 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g100740.1 | tryptophan RNA-binding attenuator-like protein...   513   e-145
Medtr4g100740.2 | tryptophan RNA-binding attenuator-like protein...   394   e-110

>Medtr4g100740.1 | tryptophan RNA-binding attenuator-like protein |
           HC | chr4:41554238-41560159 | 20130731
          Length = 281

 Score =  513 bits (1321), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 249/281 (88%), Positives = 266/281 (94%)

Query: 34  MAAPFFSTPFQPYVYQSPQDAIIAFQILGGEAQVVQIMLKPEEKIIAKPGSMCFMSGSIE 93
           MAAPFFSTPFQPYVYQS QDAII FQILGGE+QVVQIMLKP EKIIAKPGSMCFMSGS+E
Sbjct: 1   MAAPFFSTPFQPYVYQSQQDAIIPFQILGGESQVVQIMLKPHEKIIAKPGSMCFMSGSVE 60

Query: 94  MVNAYLPQNEVGIWQWLFGKSITSILLRNSGPSDGFVGIAAPYFARILPIDLAMFNGEIL 153
           M NAYLP+NEVGIWQWLFGK++T+I++RNSGPSDGFVGIAAPYFARILPIDLA FNGEIL
Sbjct: 61  MENAYLPENEVGIWQWLFGKTVTNIVVRNSGPSDGFVGIAAPYFARILPIDLATFNGEIL 120

Query: 154 CQPDAFLCSVGDVNISNTVDQRGRNVVVGAEGFLRQKLTGQGLAFILAGGSVVQKNLEIG 213
           CQPDAFLCSV DV +SNTVDQRGRNVV GAE FLRQKL+GQGLAFIL GGSVVQK LE+G
Sbjct: 121 CQPDAFLCSVNDVKVSNTVDQRGRNVVAGAEVFLRQKLSGQGLAFILGGGSVVQKILEVG 180

Query: 214 EVLAVDVSCIVAVTSTVNVQIKYNGPARRTMFGGDNVVTALLTGPGMVFIQSLPFQRLSQ 273
           EVLAVDVSCIVAVTSTV++QIKYNGPARRTMFGGDN VTA+LTGPG+VFIQSLPF R SQ
Sbjct: 181 EVLAVDVSCIVAVTSTVDIQIKYNGPARRTMFGGDNAVTAVLTGPGIVFIQSLPFPRFSQ 240

Query: 274 RIARAVTSPNMRENPKFFIQIAVFLFLAYVVIVSSLLLTDV 314
           RIARAVTSPNMRENPKFFIQIA+F FLAYVVIVSSL+LTDV
Sbjct: 241 RIARAVTSPNMRENPKFFIQIALFFFLAYVVIVSSLILTDV 281


>Medtr4g100740.2 | tryptophan RNA-binding attenuator-like protein |
           HC | chr4:41554274-41560127 | 20130731
          Length = 219

 Score =  394 bits (1013), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/213 (88%), Positives = 202/213 (94%)

Query: 34  MAAPFFSTPFQPYVYQSPQDAIIAFQILGGEAQVVQIMLKPEEKIIAKPGSMCFMSGSIE 93
           MAAPFFSTPFQPYVYQS QDAII FQILGGE+QVVQIMLKP EKIIAKPGSMCFMSGS+E
Sbjct: 1   MAAPFFSTPFQPYVYQSQQDAIIPFQILGGESQVVQIMLKPHEKIIAKPGSMCFMSGSVE 60

Query: 94  MVNAYLPQNEVGIWQWLFGKSITSILLRNSGPSDGFVGIAAPYFARILPIDLAMFNGEIL 153
           M NAYLP+NEVGIWQWLFGK++T+I++RNSGPSDGFVGIAAPYFARILPIDLA FNGEIL
Sbjct: 61  MENAYLPENEVGIWQWLFGKTVTNIVVRNSGPSDGFVGIAAPYFARILPIDLATFNGEIL 120

Query: 154 CQPDAFLCSVGDVNISNTVDQRGRNVVVGAEGFLRQKLTGQGLAFILAGGSVVQKNLEIG 213
           CQPDAFLCSV DV +SNTVDQRGRNVV GAE FLRQKL+GQGLAFIL GGSVVQK LE+G
Sbjct: 121 CQPDAFLCSVNDVKVSNTVDQRGRNVVAGAEVFLRQKLSGQGLAFILGGGSVVQKILEVG 180

Query: 214 EVLAVDVSCIVAVTSTVNVQIKYNGPARRTMFG 246
           EVLAVDVSCIVAVTSTV++QIKYNGPARRTMFG
Sbjct: 181 EVLAVDVSCIVAVTSTVDIQIKYNGPARRTMFG 213