Miyakogusa Predicted Gene

Lj0g3v0126189.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0126189.1 Non Chatacterized Hit- tr|I1MV31|I1MV31_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,92.53,0,AIM24,Mitochondrial biogenesis protein AIM24;
TRAP-like,Tryptophan RNA-binding attenuator protein-li,CUFF.7579.1
         (314 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G47420.1 | Symbols:  | Tryptophan RNA-binding attenuator prot...   450   e-127
AT4G17420.1 | Symbols:  | Tryptophan RNA-binding attenuator prot...   441   e-124
AT4G17420.3 | Symbols:  | Tryptophan RNA-binding attenuator prot...   389   e-108
AT4G17420.2 | Symbols:  | Tryptophan RNA-binding attenuator prot...   365   e-101

>AT5G47420.1 | Symbols:  | Tryptophan RNA-binding attenuator
           protein-like | chr5:19233013-19234838 FORWARD LENGTH=282
          Length = 282

 Score =  450 bits (1158), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 214/282 (75%), Positives = 246/282 (87%), Gaps = 1/282 (0%)

Query: 34  MAAPFFSTPFQPYVYQSPQDAIIAFQILGGEAQVVQIMLKPEEKIIAKPGSMCFMSGSIE 93
           MAAPFFSTPFQPYVYQS QD I  FQILGGE+QVVQIMLK EEK+IAKP SMC+MSGSIE
Sbjct: 1   MAAPFFSTPFQPYVYQSQQDTITPFQILGGESQVVQIMLKSEEKVIAKPASMCYMSGSIE 60

Query: 94  MVNAYLPQNEVGIWQWLFGKSITSILLRNSGPSDGFVGIAAPYFARILPIDLAMFNGEIL 153
           M N Y P+ EVG+ QW+ GKS++S++LRN+G +DGFVGIAAPY ARILPIDLAMF GEIL
Sbjct: 61  MENTYTPEQEVGVLQWILGKSVSSVVLRNTGQNDGFVGIAAPYLARILPIDLAMFGGEIL 120

Query: 154 CQPDAFLCSVGDVNISNTVDQRGRNVV-VGAEGFLRQKLTGQGLAFILAGGSVVQKNLEI 212
           CQPDAFLCSV DV + N+VDQR RN+V  GAEGFLRQ+L+GQGLAFILAGGSVVQK LE+
Sbjct: 121 CQPDAFLCSVHDVKVVNSVDQRARNIVAAGAEGFLRQRLSGQGLAFILAGGSVVQKVLEV 180

Query: 213 GEVLAVDVSCIVAVTSTVNVQIKYNGPARRTMFGGDNVVTALLTGPGMVFIQSLPFQRLS 272
           GEV ++DVSCI A+T +++V+IK N P RR +FGGDNVV A LTGPG+VFIQSLPF RLS
Sbjct: 181 GEVFSIDVSCIAALTPSIDVRIKNNAPFRRALFGGDNVVMATLTGPGIVFIQSLPFHRLS 240

Query: 273 QRIARAVTSPNMRENPKFFIQIAVFLFLAYVVIVSSLLLTDV 314
           QRIAR+VTSPNMRENPK  IQIA+F FLAY VI+SSL+LT+V
Sbjct: 241 QRIARSVTSPNMRENPKLLIQIAIFAFLAYAVILSSLILTEV 282


>AT4G17420.1 | Symbols:  | Tryptophan RNA-binding attenuator
           protein-like | chr4:9722544-9724443 REVERSE LENGTH=285
          Length = 285

 Score =  441 bits (1134), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 213/285 (74%), Positives = 247/285 (86%), Gaps = 4/285 (1%)

Query: 34  MAAPFFSTPFQPYVYQSPQDAIIAFQILGGEAQVVQIMLKPEEKIIAKPGSMCFMSGSIE 93
           MAAPFFSTPFQPYVYQS +D I  FQILGGEAQVVQIMLKP+EK+IAKPGSMC+MSGSIE
Sbjct: 1   MAAPFFSTPFQPYVYQSQEDTITPFQILGGEAQVVQIMLKPQEKVIAKPGSMCYMSGSIE 60

Query: 94  MVNAYLPQNEVGIWQWLFGKSITSILLRNSGPSDGFVGIAAPYFARILPIDLAMFNGEIL 153
           M N Y P+ EVG+ QW+ GKS++SI+LRN+G +DGFVGIAAP  ARILP+DLAMF G+IL
Sbjct: 61  MDNTYTPEQEVGVVQWILGKSVSSIVLRNTGQNDGFVGIAAPSLARILPLDLAMFGGDIL 120

Query: 154 CQPDAFLCSVGDVNISNTVDQ--RGRNV-VVGAEGFLRQKLTGQGLAFILAGGSVVQKNL 210
           CQPDAFLCSV DV + NTV Q  R RN+   GAEG LRQ+L+GQGLAFI+AGGSVVQKNL
Sbjct: 121 CQPDAFLCSVHDVKVVNTVYQRHRARNIAAAGAEGVLRQRLSGQGLAFIIAGGSVVQKNL 180

Query: 211 EIGEVLAVDVSCIVAVTSTVNVQIKYN-GPARRTMFGGDNVVTALLTGPGMVFIQSLPFQ 269
           E+GEVL +DVSCI A+T ++N QIKYN  P RR +FGGDNVVTA LTGPG+VFIQSLPF 
Sbjct: 181 EVGEVLTIDVSCIAALTPSINFQIKYNAAPVRRAVFGGDNVVTATLTGPGIVFIQSLPFH 240

Query: 270 RLSQRIARAVTSPNMRENPKFFIQIAVFLFLAYVVIVSSLLLTDV 314
           RLSQRIAR+VTSPNMRENP+  +QI +F+FLAYVVIVSSL+LT++
Sbjct: 241 RLSQRIARSVTSPNMRENPRLLVQIGLFIFLAYVVIVSSLILTEM 285


>AT4G17420.3 | Symbols:  | Tryptophan RNA-binding attenuator
           protein-like | chr4:9722378-9724443 REVERSE LENGTH=273
          Length = 273

 Score =  389 bits (1000), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/259 (72%), Positives = 215/259 (83%), Gaps = 8/259 (3%)

Query: 34  MAAPFFSTPFQPYVYQSPQDAIIAFQILGGEAQVVQIMLKPEEKIIAKPGSMCFMSGSIE 93
           MAAPFFSTPFQPYVYQS +D I  FQILGGEAQVVQIMLKP+EK+IAKPGSMC+MSGSIE
Sbjct: 1   MAAPFFSTPFQPYVYQSQEDTITPFQILGGEAQVVQIMLKPQEKVIAKPGSMCYMSGSIE 60

Query: 94  MVNAYLPQNEVGIWQWLFGKSITSILLRNSGPSDGFVGIAAPYFARILPIDLAMFNGEIL 153
           M N Y P+ EVG+ QW+ GKS++SI+LRN+G +DGFVGIAAP  ARILP+DLAMF G+IL
Sbjct: 61  MDNTYTPEQEVGVVQWILGKSVSSIVLRNTGQNDGFVGIAAPSLARILPLDLAMFGGDIL 120

Query: 154 CQPDAFLCSVGDVNISNTVDQRGRNVVVGAEGFLRQKLTGQGLAFILAGGSVVQKNLEIG 213
           CQPDAFLCSV DV + NTV QR R   + A G        +GLAFI+AGGSVVQKNLE+G
Sbjct: 121 CQPDAFLCSVHDVKVVNTVYQRHRARNIAAAG-------AEGLAFIIAGGSVVQKNLEVG 173

Query: 214 EVLAVDVSCIVAVTSTVNVQIKYN-GPARRTMFGGDNVVTALLTGPGMVFIQSLPFQRLS 272
           EVL +DVSCI A+T ++N QIKYN  P RR +FGGDNVVTA LTGPG+VFIQSLPF RLS
Sbjct: 174 EVLTIDVSCIAALTPSINFQIKYNAAPVRRAVFGGDNVVTATLTGPGIVFIQSLPFHRLS 233

Query: 273 QRIARAVTSPNMRENPKFF 291
           QRIAR+VTSPNMRENP+  
Sbjct: 234 QRIARSVTSPNMRENPRLL 252


>AT4G17420.2 | Symbols:  | Tryptophan RNA-binding attenuator
           protein-like | chr4:9722378-9724443 REVERSE LENGTH=267
          Length = 267

 Score =  365 bits (938), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/245 (72%), Positives = 203/245 (82%), Gaps = 8/245 (3%)

Query: 34  MAAPFFSTPFQPYVYQSPQDAIIAFQILGGEAQVVQIMLKPEEKIIAKPGSMCFMSGSIE 93
           MAAPFFSTPFQPYVYQS +D I  FQILGGEAQVVQIMLKP+EK+IAKPGSMC+MSGSIE
Sbjct: 1   MAAPFFSTPFQPYVYQSQEDTITPFQILGGEAQVVQIMLKPQEKVIAKPGSMCYMSGSIE 60

Query: 94  MVNAYLPQNEVGIWQWLFGKSITSILLRNSGPSDGFVGIAAPYFARILPIDLAMFNGEIL 153
           M N Y P+ EVG+ QW+ GKS++SI+LRN+G +DGFVGIAAP  ARILP+DLAMF G+IL
Sbjct: 61  MDNTYTPEQEVGVVQWILGKSVSSIVLRNTGQNDGFVGIAAPSLARILPLDLAMFGGDIL 120

Query: 154 CQPDAFLCSVGDVNISNTVDQRGRNVVVGAEGFLRQKLTGQGLAFILAGGSVVQKNLEIG 213
           CQPDAFLCSV DV + NTV QR R   + A G        +GLAFI+AGGSVVQKNLE+G
Sbjct: 121 CQPDAFLCSVHDVKVVNTVYQRHRARNIAAAG-------AEGLAFIIAGGSVVQKNLEVG 173

Query: 214 EVLAVDVSCIVAVTSTVNVQIKYN-GPARRTMFGGDNVVTALLTGPGMVFIQSLPFQRLS 272
           EVL +DVSCI A+T ++N QIKYN  P RR +FGGDNVVTA LTGPG+VFIQSLPF RLS
Sbjct: 174 EVLTIDVSCIAALTPSINFQIKYNAAPVRRAVFGGDNVVTATLTGPGIVFIQSLPFHRLS 233

Query: 273 QRIAR 277
           QRIAR
Sbjct: 234 QRIAR 238