Miyakogusa Predicted Gene

Lj0g3v0112699.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0112699.1 Non Chatacterized Hit- tr|D7SP48|D7SP48_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,50.97,0,seg,NULL; SUBFAMILY NOT NAMED,NULL; ZINC FINGER CW-TYPE
COILED-COIL DOMAIN PROTEIN 3.,NULL; coiled-c,CUFF.6555.1
         (256 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G36290.1 | Symbols: CRT1 | compromised recognition of TCV 1 |...   232   2e-61
AT4G36270.1 | Symbols:  | ATP binding | chr4:17161159-17164227 R...   226   8e-60
AT4G36280.1 | Symbols:  | Histidine kinase-, DNA gyrase B-, and ...   223   1e-58
AT1G19100.1 | Symbols:  | Histidine kinase-, DNA gyrase B-, and ...   167   4e-42
AT5G50780.1 | Symbols:  | Histidine kinase-, DNA gyrase B-, and ...   141   4e-34
AT4G24970.1 | Symbols:  | Histidine kinase-, DNA gyrase B-, and ...   140   6e-34
AT5G13130.1 | Symbols:  | Histidine kinase-, DNA gyrase B-, and ...   129   2e-30
AT5G13130.2 | Symbols:  | Histidine kinase-, DNA gyrase B-, and ...   116   1e-26

>AT4G36290.1 | Symbols: CRT1 | compromised recognition of TCV 1 |
           chr4:17169669-17173187 REVERSE LENGTH=635
          Length = 635

 Score =  232 bits (591), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 130/295 (44%), Positives = 170/295 (57%), Gaps = 46/295 (15%)

Query: 1   MLYLRKFSNFKIILRGKLVDQFNIADELIHSEVIRYRPQQAVASNEAMVDTTIGFIKEAP 60
           MLYL+KF NFKIILRG  V QFNIADE  H E I Y+PQ A A + A     +GFIKEAP
Sbjct: 340 MLYLKKFKNFKIILRGVSVAQFNIADEFRHPETIMYKPQ-AAAVDYAATGIKVGFIKEAP 398

Query: 61  NLNVAGFNVYHKNRLIKPFWKVNPDXXXXXXXXXXXLEANFIEPAHDKQDFERSLLFVRL 120
            L + GFNVYHKNRLI+PFWKV  +           LEANFIEPAHDKQDFERS LF+RL
Sbjct: 399 KLPICGFNVYHKNRLIRPFWKVVLEGSTRGNGVMGVLEANFIEPAHDKQDFERSSLFLRL 458

Query: 121 ETKLKQMVNDYWKGHCHLVGYQPLNFKSQNVQKETQIRQSAGRSTNTQN---------VH 171
           E +LK++ +DYW+ HCH+ GYQ     +   ++     Q    + NT N          H
Sbjct: 459 EARLKRITSDYWQNHCHIFGYQTAQIPADKSKRTVIPDQPP--TVNTYNPSPLPSDRISH 516

Query: 172 QDDLYIDQTIAGATSTGTPG-------------------------PVAVDKN-------- 198
              +  +  ++ ATS+ T                           P A D          
Sbjct: 517 GGPIIREINLSNATSSRTAAVAAPHLRNYTGLRNNFQPVQLNPQPPAAGDTGNNLVGKLA 576

Query: 199 -KICEENIQLFMKCEEFRKKETELKQTVENLEEDLKDLQRKCRQLSAFLVAKKKQ 252
            +I EEN+QLFM+CEE+ KKE E++QTV++LE++L++++ KC QL+  + AKKK+
Sbjct: 577 AEIREENLQLFMRCEEYVKKENEVEQTVKSLEKELEEIKSKCAQLALLVDAKKKE 631


>AT4G36270.1 | Symbols:  | ATP binding | chr4:17161159-17164227
           REVERSE LENGTH=486
          Length = 486

 Score =  226 bits (577), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 131/295 (44%), Positives = 171/295 (57%), Gaps = 48/295 (16%)

Query: 1   MLYLRKFSNFKIILRGKLVDQFNIADELIHSEVIRYRPQQAVASNEAMVDTTIGFIKEAP 60
           MLYL++F+NFKIILRG  V+QFNIADEL   E I+Y P       +A  +  +GFIKEAP
Sbjct: 193 MLYLKRFNNFKIILRGIPVEQFNIADELRLPETIKYNPH--TTKEKAPTEIKVGFIKEAP 250

Query: 61  NLNVAGFNVYHKNRLIKPFWKVNPDXXXXXXXXXXXLEANFIEPAHDKQDFERSLLFVRL 120
            L V GFNVYHKNRLI+PFWKV              LEANFIEPAHDKQDFERS LF RL
Sbjct: 251 KLAVCGFNVYHKNRLIRPFWKVTMGGERRGSGVVGVLEANFIEPAHDKQDFERSSLFQRL 310

Query: 121 ETKLKQMVNDYWKGHCHLVGY-------------------------QPLNFKSQNVQKET 155
           E +LK++V++YW  HCH+ GY                          PL   S  + +  
Sbjct: 311 EARLKKIVSNYWNTHCHVFGYCTYGMPADKSKRIAIPDQPPTVNTFNPLPLPSDEISQGG 370

Query: 156 QIRQSAGRSTNTQN--------VHQDDLYIDQ-TIAGATSTGTPGPVAVD---------K 197
           QI +    + NT N        V Q    I + +++ ATS+      AVD          
Sbjct: 371 QIIRDQPPTVNTFNPLPLPSDRVSQGGPIIREISLSNATSSRI---AAVDTENNLVGKSA 427

Query: 198 NKICEENIQLFMKCEEFRKKETELKQTVENLEEDLKDLQRKCRQLSAFLVAKKKQ 252
           ++I EENIQLFM+CEE+ KKETEL+QTV NL ++L++ + KC +L+  + AK+++
Sbjct: 428 HEISEENIQLFMRCEEYVKKETELEQTVSNLAKELEETKSKCARLALLVDAKRRE 482


>AT4G36280.1 | Symbols:  | Histidine kinase-, DNA gyrase B-, and
           HSP90-like ATPase family protein |
           chr4:17165513-17169277 REVERSE LENGTH=626
          Length = 626

 Score =  223 bits (567), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 129/297 (43%), Positives = 166/297 (55%), Gaps = 51/297 (17%)

Query: 1   MLYLRKFSNFKIILRGKLVDQFNIADELIHSEVIRYRPQQAVASNEAMVDTTIGFIKEAP 60
           MLYL+KF NFKII+RG  V+QFNIAD     E+I+Y+P  A  + +A  +  IGF+KEAP
Sbjct: 332 MLYLKKFKNFKIIIRGIPVEQFNIADGFRFPEIIKYKPHTAT-TEQASTEIKIGFVKEAP 390

Query: 61  NLNVAGFNVYHKNRLIKPFWKVNPDXXXXXXXXXXXLEANFIEPAHDKQDFERSLLFVRL 120
            L + GFNVYHKNRLI+PFWKV              LEANFIEPAHDKQDFERS LF RL
Sbjct: 391 KLAICGFNVYHKNRLIRPFWKVTMGGDSTGHGVVGVLEANFIEPAHDKQDFERSSLFQRL 450

Query: 121 ETKLKQMVNDYWKGHCHLVGY-----------------QPLNFKSQNVQKETQIRQSAG- 162
           E +LK++V  YW  HCHL+GY                 QP    + N       + S G 
Sbjct: 451 EARLKKIVYSYWYSHCHLLGYHKYQMPADKSKKIAIPDQPPTISTVNPSPLPSDKISQGG 510

Query: 163 ---RSTNTQNVHQDDLYIDQTIAGAT-----STG----------TPGPVAVD-------- 196
              R  N  N         +T+A A+     STG           P P A D        
Sbjct: 511 PIIREINLSNATS-----SRTVAFASPHLRNSTGLRSNFQPVQLNPQPTAADTGNNLDGK 565

Query: 197 -KNKICEENIQLFMKCEEFRKKETELKQTVENLEEDLKDLQRKCRQLSAFLVAKKKQ 252
              +I +EN+QLFM+CEE+ KKE E +QTV++LE++L++ + KC  L+  + AKKK+
Sbjct: 566 SAGEIRQENLQLFMRCEEYIKKENETEQTVKSLEKELEEFKSKCAHLALLVDAKKKE 622


>AT1G19100.1 | Symbols:  | Histidine kinase-, DNA gyrase B-, and
           HSP90-like ATPase family protein | chr1:6595560-6601159
           FORWARD LENGTH=663
          Length = 663

 Score =  167 bits (424), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 78/142 (54%), Positives = 101/142 (71%), Gaps = 1/142 (0%)

Query: 1   MLYLRKFSNFKIILRGKLVDQFNIADELIHSEVIRYRPQQAVASNEAMVDTTIGFIKEAP 60
           +LYLR    FKIILRGK+V+  N+AD+L+H + I Y+PQ A  S EA+V TTIGF+KEAP
Sbjct: 361 ILYLRIPETFKIILRGKVVEHHNVADDLMHPQYILYKPQ-AAGSEEALVVTTIGFLKEAP 419

Query: 61  NLNVAGFNVYHKNRLIKPFWKVNPDXXXXXXXXXXXLEANFIEPAHDKQDFERSLLFVRL 120
            +N+ GF VYHKNRLI PFW+V              LEANF+EP H+KQDFE+++L  +L
Sbjct: 420 KVNLHGFCVYHKNRLIMPFWQVINYSSSRGRGVVGVLEANFVEPTHNKQDFEKTVLLQKL 479

Query: 121 ETKLKQMVNDYWKGHCHLVGYQ 142
           E +LK+M  +YW  HC L+GYQ
Sbjct: 480 ENRLKEMTVEYWSCHCVLIGYQ 501


>AT5G50780.1 | Symbols:  | Histidine kinase-, DNA gyrase B-, and
           HSP90-like ATPase family protein |
           chr5:20650269-20654948 FORWARD LENGTH=819
          Length = 819

 Score =  141 bits (355), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 75/185 (40%), Positives = 110/185 (59%), Gaps = 26/185 (14%)

Query: 1   MLYLRKFSNFKIILRGKLVDQFNIADELIHSEVIRYRPQQA------------------- 41
           +LYL+    F+IILRGK V+  NI ++++ +E I YRP++A                   
Sbjct: 410 ILYLKISHEFRIILRGKDVEHHNIVNDMMQTEKITYRPKEAADGCAKYSNLYNLKIWLLV 469

Query: 42  --VASNEAMVDTTIGFIKEAPN-LNVAGFNVYHKNRLIKPFWKVNPDXXXXXXXXXXXLE 98
             V+   A+V  TIGF+K+A + ++V GFNVYHKNRLIKPFW++              LE
Sbjct: 470 LHVSQLSAVV--TIGFVKDAKHHVDVQGFNVYHKNRLIKPFWRIWNAAGSDGRGVIGVLE 527

Query: 99  ANFIEPAHDKQDFERSLLFVRLETKLKQMVNDYWKGHCHLVGYQPLNFK--SQNVQKETQ 156
           ANF+EPAHDKQ FER+ +  RLE +L  M  DYW+  CH +GY     +  +++ +K+T+
Sbjct: 528 ANFVEPAHDKQGFERTTVLSRLEARLLHMQKDYWRSKCHKIGYAKRQGRKSAKDTEKDTE 587

Query: 157 IRQSA 161
            R+S+
Sbjct: 588 DRESS 592


>AT4G24970.1 | Symbols:  | Histidine kinase-, DNA gyrase B-, and
           HSP90-like ATPase family protein |
           chr4:12831125-12835449 FORWARD LENGTH=707
          Length = 707

 Score =  140 bits (354), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 68/147 (46%), Positives = 95/147 (64%), Gaps = 5/147 (3%)

Query: 1   MLYLRKFSNFKIILRGKLVDQFNIADELIHSEVIRYRPQQ---AVASNEAMVDTTIGFIK 57
           +LYLR    F+IILRG  V+  ++ ++++ +E I YRPQ     V +N + +   IGF+K
Sbjct: 419 ILYLRIPPGFRIILRGIDVEHHSVVNDMMQTEQITYRPQSESYGVVTNMSAI-VIIGFVK 477

Query: 58  EAPN-LNVAGFNVYHKNRLIKPFWKVNPDXXXXXXXXXXXLEANFIEPAHDKQDFERSLL 116
           +A + ++V GFNVYHKNRLIKPFW++              LEANF+EPAHDKQ FER+ +
Sbjct: 478 DAKHHVDVQGFNVYHKNRLIKPFWRIWNATGSDGRGVIGVLEANFVEPAHDKQGFERTTV 537

Query: 117 FVRLETKLKQMVNDYWKGHCHLVGYQP 143
             RLE++L QM   YW  +CH +GY P
Sbjct: 538 LARLESRLVQMQKTYWSTNCHKIGYAP 564


>AT5G13130.1 | Symbols:  | Histidine kinase-, DNA gyrase B-, and
           HSP90-like ATPase family protein | chr5:4166755-4170324
           FORWARD LENGTH=708
          Length = 708

 Score =  129 bits (324), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/199 (37%), Positives = 117/199 (58%), Gaps = 19/199 (9%)

Query: 1   MLYLRKFSNFKIILRGKLVDQFNIADELIHSEVIRYRPQQAV--ASNEAMVDT-TIGFIK 57
           +LYL++  NF+IILRG+ V+  ++ D+++  E   Y+P ++      E MV +  +GF+K
Sbjct: 358 ILYLKRPDNFRIILRGEDVEHHSVLDDMMKIEEKTYKPMRSPEWPDQEEMVASLKLGFVK 417

Query: 58  EAPN-LNVAGFNVYHKNRLIKPFWKVNPDXXXXXXXXXXXLEANFIEPAHDKQDFERSLL 116
           +A + +++ GFNVYHKNRLIKPFW+V              LEANFI+PAH+KQ FER+++
Sbjct: 418 DAHHHIDIQGFNVYHKNRLIKPFWRVWNAAGSDGRGVIGILEANFIQPAHNKQGFERTVV 477

Query: 117 FVRLETKLKQMVNDYWKGHCHLVGYQPLNFKSQNVQKETQIRQSAGRSTNTQNVHQDDLY 176
             +LE++L     +YW   CH +GY P   + +    E+ + ++  R  N  NV      
Sbjct: 478 LAKLESRLVTHQKNYWSSRCHEIGYAP---RRKQKNYESSVTETP-RPFNNINV------ 527

Query: 177 IDQTIAGATSTGTPGPVAV 195
               + G++S+ TP PV V
Sbjct: 528 ----VKGSSSS-TPVPVRV 541


>AT5G13130.2 | Symbols:  | Histidine kinase-, DNA gyrase B-, and
           HSP90-like ATPase family protein | chr5:4166755-4170324
           FORWARD LENGTH=696
          Length = 696

 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 116/228 (50%), Gaps = 48/228 (21%)

Query: 1   MLYLRKFSNFKIILRGKLVDQFNIADELIHSEVIRYRP--------QQAVASNEAMVDTT 52
           +LYL++  NF+IILRG+ V+  ++ D+++  E   Y+P        Q+ V     +V   
Sbjct: 358 ILYLKRPDNFRIILRGEDVEHHSVLDDMMKIEEKTYKPMRSPEWPDQEEVLPYLTLVSLF 417

Query: 53  I------------------------GFIKEAPN-LNVAGFNVYHKNRLIKPFWKVNPDXX 87
           I                        GF+K+A + +++ GFNVYHKNRLIKPFW+V     
Sbjct: 418 IILKHSQKFLLCFQKILQMVASLKLGFVKDAHHHIDIQGFNVYHKNRLIKPFWRVWNAAG 477

Query: 88  XXXXXXXXXLEANFIEPAHDKQDFERSLLFVRLETKLKQMVNDYWKGHCHLVGYQPLNFK 147
                    LEANFI+PAH+KQ FER+++  +LE++L     +YW   CH +GY P   +
Sbjct: 478 SDGRGVIGILEANFIQPAHNKQGFERTVVLAKLESRLVTHQKNYWSSRCHEIGYAP---R 534

Query: 148 SQNVQKETQIRQSAGRSTNTQNVHQDDLYIDQTIAGATSTGTPGPVAV 195
            +    E+ + ++  R  N  NV          + G++S+ TP PV V
Sbjct: 535 RKQKNYESSVTETP-RPFNNINV----------VKGSSSS-TPVPVRV 570