Miyakogusa Predicted Gene

Lj0g3v0111689.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0111689.1 Non Characterized Hit- tr|C5YGE9|C5YGE9_SORBI
Putative uncharacterized protein Sb06g016575
(Fragment,48.33,0.00000001,seg,NULL; SET,SET domain; SET domain,NULL;
no description,NULL; PUTATIVE UNCHARACTERIZED PROTEIN,NUL,CUFF.6466.1
         (302 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g045070.1 | SET domain protein | HC | chr2:19607366-196121...   275   3e-74
Medtr3g062560.1 | hypothetical protein | HC | chr3:28263648-2826...   137   1e-32

>Medtr2g045070.1 | SET domain protein | HC | chr2:19607366-19612113
           | 20130731
          Length = 658

 Score =  275 bits (704), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 164/307 (53%), Positives = 183/307 (59%), Gaps = 22/307 (7%)

Query: 12  DIDIATDXXXXXXXXXXXXHNSHLHTHCSACFSPLPNPNPHSL-------FYCSPLCXXX 64
           DI+IATD            HN+HLHTHCS+CFS +  P             YCS  C   
Sbjct: 20  DINIATDITPPLTPLSFSLHNTHLHTHCSSCFSLITPPPIPIPNPNNPPIHYCSLHCSTS 79

Query: 65  XXXX--------XXXXXXXXXXXXXXXXXXXXXPSSTGRIAGLLSNRHLLTCPNLSPSHX 116
                                               + R+  LL+NRHLLT  N      
Sbjct: 80  HSSIPLSSAEHHLPSSSTSSLLRTALRLLLHRHSHGSTRLNHLLTNRHLLTSQN--DDDV 137

Query: 117 XXXXXXXXRAMAAAIAKQRGGREQDDAVLEDATVALCAVLTNAVEVHDSQGCALGIAVFE 176
                     MA AI KQ G   +D   LE+ATVALCAVLTNAVEVHD++GCALGIAVFE
Sbjct: 138 AETVRLGALTMATAIEKQNGC-SKDGGTLEEATVALCAVLTNAVEVHDNEGCALGIAVFE 196

Query: 177 PAFSWINHSCSPNACYRFTF-KSLSSDEAKLRIAPF--NSQQ-SMIDSEVCGGSSEFGKE 232
            AFSWINHSCSPNACYRF+F  SL S E+KLRIAPF  NS+Q   IDS V G SSEF +E
Sbjct: 197 HAFSWINHSCSPNACYRFSFSNSLLSRESKLRIAPFTQNSKQPQQIDSGVFGSSSEFAQE 256

Query: 233 WELGYGPRLIVRSIKRINKGDEVTVAYTDLLQPKAMRQSELWSKYRFNCCCQRCSALPFT 292
                GP+LIVRSIKRI KG+EVTVAYTDLLQPK  RQSELWSKY+F CCCQRCS+L FT
Sbjct: 257 GREISGPKLIVRSIKRIKKGEEVTVAYTDLLQPKGTRQSELWSKYQFICCCQRCSSLLFT 316

Query: 293 YVDHALQ 299
           YVDH LQ
Sbjct: 317 YVDHILQ 323


>Medtr3g062560.1 | hypothetical protein | HC |
           chr3:28263648-28262405 | 20130731
          Length = 200

 Score =  137 bits (345), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 74/119 (62%), Positives = 85/119 (71%), Gaps = 5/119 (4%)

Query: 95  RIAGLLSNRHLLTCPNLSPSHXXXXXXXXXRAMAAAIAKQRGGREQDDAVLEDATVALCA 154
           R+  LL+NRHLLT  N   +            MAAAI KQ G      A+LE+ATVALCA
Sbjct: 71  RLNHLLTNRHLLTSQNDDVAETVRLGAVI---MAAAIEKQNGCSYDGAAILEEATVALCA 127

Query: 155 VLTNAVEVHDSQGCALGIAVFEPAFSWINHSCSPNACYRFTF--KSLSSDEAKLRIAPF 211
           VLTNAVEVHD++GCALGIAVFE AFSWINHSCSPNACYRF+F   SL   +++LRIAPF
Sbjct: 128 VLTNAVEVHDNEGCALGIAVFEHAFSWINHSCSPNACYRFSFSTSSLLPHQSELRIAPF 186