Miyakogusa Predicted Gene

Lj0g3v0111689.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0111689.1 Non Chatacterized Hit- tr|C5YGE9|C5YGE9_SORBI
Putative uncharacterized protein Sb06g016575
(Fragment,48.33,0.00000001,seg,NULL; SET,SET domain; SET domain,NULL;
no description,NULL; PUTATIVE UNCHARACTERIZED PROTEIN,NUL,CUFF.6466.1
         (302 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G43245.1 | Symbols:  | SET domain-containing protein | chr1:1...   180   1e-45

>AT1G43245.1 | Symbols:  | SET domain-containing protein |
           chr1:16308982-16310883 REVERSE LENGTH=558
          Length = 558

 Score =  180 bits (456), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 121/299 (40%), Positives = 152/299 (50%), Gaps = 29/299 (9%)

Query: 12  DIDIATDXXXXXXXXXXXXHNSHLHTHCSACFSPLPNPNPHSLFYCSPLCXXXXXXXXXX 71
           DI+I TD            ++S L +HCS+CFS LP   P  L YCS  C          
Sbjct: 8   DIEIRTDLFPPLSPLASSLYDSFLSSHCSSCFSLLPPSPPQPL-YCSAACSLTDSFTNSP 66

Query: 72  X----------XXXXXXXXXXXXXXXXXPSSTGRIAGLLSNRHLLTC-PNLSPSHXXXXX 120
                                        SS  R+  LL+N HLL   P++S +      
Sbjct: 67  QFPPEITPILPSDIRTSLHLLNSTAVDTSSSPHRLNNLLTNHHLLMADPSISVA-----I 121

Query: 121 XXXXRAMAAAIAKQRGGREQDDAVLEDATVALCAVLTNAVEVHDSQGCALGIAVFEPAFS 180
                 +A  I   R   E ++A       A+CAVLTNAVEVHDS G ALGIA++  +FS
Sbjct: 122 HHAANFIATVIRSNRKNTELEEA-------AICAVLTNAVEVHDSNGLALGIALYNSSFS 174

Query: 181 WINHSCSPNACYRFTFKSLSSDEAKLRIAPFNSQQSMIDSEVCGGSSEFGKEWELGYGPR 240
           WINHSCSPN+CYRF     S  +  +     +S   +   +VCG S   G     G GP+
Sbjct: 175 WINHSCSPNSCYRFVNNRTSYHDVHVTNTETSSNLEL-QEQVCGTSLNSGN----GNGPK 229

Query: 241 LIVRSIKRINKGDEVTVAYTDLLQPKAMRQSELWSKYRFNCCCQRCSALPFTYVDHALQ 299
           LIVRSIKRI  G+E+TV+Y DLLQP  +RQS+LWSKYRF C C RC+A P  YVD  L+
Sbjct: 230 LIVRSIKRIKSGEEITVSYIDLLQPTGLRQSDLWSKYRFMCNCGRCAASPPAYVDSILE 288