Miyakogusa Predicted Gene

Lj0g3v0103039.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0103039.1 Non Characterized Hit- tr|I1M0W6|I1M0W6_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,44.26,0.000000000000002, ,CUFF.5826.1
         (190 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g437480.1 | chromatin remodeling complex subunit | HC | ch...   124   4e-29
Medtr8g037345.1 | chromatin remodeling complex subunit | HC | ch...   120   6e-28

>Medtr2g437480.1 | chromatin remodeling complex subunit | HC |
           chr2:14725811-14732214 | 20130731
          Length = 1042

 Score =  124 bits (312), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 100/155 (64%), Gaps = 14/155 (9%)

Query: 10  SKRSAPNGISPQ-GRKRLKLSSESFPYSSHDKAIPEAPNNSPH-VEDPLKCLETGRFGSV 67
           SKR AP GI P+ GRK+LKLSS+S P  +H   +  +   SP+ + + +  LE+G+FGSV
Sbjct: 5   SKRPAPTGILPEEGRKKLKLSSDSLPCLTHGDVVDYS---SPYAISNVINRLESGKFGSV 61

Query: 68  TKDIEALITRKMQVLGPFFARFPKLVTQELKVAVDRDEEIDKLENKKGIVMSQEKVIDLK 127
           TK+IE LIT+KMQ+LGP+FA+ P+LV Q L+V  D DEE   +ENK    +  + VIDL 
Sbjct: 62  TKNIEDLITQKMQILGPYFAKCPRLVNQLLRVVTDHDEETPNMENKNVNGLQHDNVIDLD 121

Query: 128 E--EHIKKDATAAQHV-------VIIDSDEEDDRN 153
              EH +KD  A +          IIDSDEEDD++
Sbjct: 122 SDGEHTEKDILAPKRGYNVTAVPFIIDSDEEDDKD 156



 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 11/84 (13%)

Query: 99  VAVDRDEEIDKLENKKGIVMSQEKVIDLKEEHIKKDATAAQHVVIIDSDEEDDRNVKSSL 158
           V +D DEE D+  +++   M  EKV  +  ++           VIIDS+ EDDR+  S L
Sbjct: 252 VIIDSDEEDDRNHDEETPNMENEKVTGMSCQN-----------VIIDSNGEDDRDQTSFL 300

Query: 159 PFNEAVLLKSLHSPALKMTTVSSP 182
           PF+E  L K + SPAL+M     P
Sbjct: 301 PFHEVALPKPVQSPALEMIGYHDP 324


>Medtr8g037345.1 | chromatin remodeling complex subunit | HC |
           chr8:13958611-13951546 | 20130731
          Length = 929

 Score =  120 bits (302), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 78/174 (44%), Positives = 101/174 (58%), Gaps = 22/174 (12%)

Query: 19  SPQGRKRLKLSSESFPYSSHDKAIPEAPNNSPHVEDPLKCLETGRFGSVTKDIEALITRK 78
           S +G K+LKLSS+  P S   K +  +  N   + + L  LE G +GSVTKDI+ALITRK
Sbjct: 21  SEEGCKKLKLSSDGLPCSVQAKVVDYS--NPYAITEVLNSLEGGEYGSVTKDIDALITRK 78

Query: 79  MQVLGPFFARFPKLVTQELKVAVDRDEEIDKLENKKGIVMSQEKVIDLKEEHIKKDATAA 138
           MQVLGP+FA++P L+ + LKV   +DE+            S + VIDL E  I++D  A 
Sbjct: 79  MQVLGPYFAKYPTLIDRFLKVVTVQDEKSHH---------SDQNVIDLDEGQIQRDVAAP 129

Query: 139 QH----------VVIIDSDEEDDRNVKSSLPFNEAVLLKSLHSPALKMTTVSSP 182
           +           VVIIDSDEEDDR+ KS   ++E VL K   SPALKM     P
Sbjct: 130 KREKDVPAAQCPVVIIDSDEEDDRDQKSFHAYHEVVLPKR-QSPALKMIGYHPP 182