Miyakogusa Predicted Gene

Lj0g3v0102259.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0102259.1 tr|G7KCX1|G7KCX1_MEDTR GTP-binding protein
OS=Medicago truncatula GN=MTR_5g089970 PE=4 SV=1,72.79,0,MMR_HSR1,GTP
binding domain; coiled-coil,NULL; GTP-BINDING PROTEIN HFLX,NULL;
GTP-BINDING PROTEIN HF,CUFF.5763.1
         (603 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G49725.1 | Symbols:  | GTP-binding protein, HflX | chr3:18442...   440   e-123
AT5G57960.1 | Symbols:  | GTP-binding protein, HflX | chr5:23463...   114   2e-25

>AT3G49725.1 | Symbols:  | GTP-binding protein, HflX |
           chr3:18442448-18445397 REVERSE LENGTH=620
          Length = 620

 Score =  440 bits (1131), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 261/545 (47%), Positives = 316/545 (57%), Gaps = 51/545 (9%)

Query: 57  VVQPRLRPEKLLQAKLNEALCLANSLEEQRDGYFHTDFFDKPLPPHLLVQNPSVKGHKPR 116
           +VQPRL P K LQAKLNEALCLANSLEEQR GYF +DFFDK LP H++VQNP  +  KPR
Sbjct: 111 LVQPRLAPPKYLQAKLNEALCLANSLEEQRYGYFESDFFDKELPSHVVVQNPVRRSSKPR 170

Query: 117 ADTYFGPGTVDNIKCNLRAAEDKDGVDAVFVNTILSGVQQRNLERAWDKPVLDRVGLIIE 176
            DTYFG GTVDNIKC+L A + K+ VDAVFVN IL+ +QQRNLER W KPVLDRVGLIIE
Sbjct: 171 VDTYFGSGTVDNIKCHLNAEDSKEEVDAVFVNAILTAIQQRNLERIWAKPVLDRVGLIIE 230

Query: 177 IFNAHAFTXXXXXXXXXXXXSFKKTXXXXXXXXXXXXTFGAHGETEVVXX---XXXXXXX 233
           IFNAHA T             + K+            TFG  GE EVV            
Sbjct: 231 IFNAHAHTKEAKLQAELAALMYNKSRLVRVRGTDGRHTFGQFGEAEVVSARGRAGSKGTG 290

Query: 234 XXXXXXXXETEXXXXXXXXXXXXXXXXTQIEEVRRTRALQRAGRKRHGGSLGQGLATVAV 293
                   ETE                +QI+E +RTR LQRAGRK+  G  G+   T+AV
Sbjct: 291 GGFVGGAGETELQLQRRRISDRRIRLLSQIKEAQRTRLLQRAGRKKRVGLEGESSGTIAV 350

Query: 294 VGYTNAGKSTLVSECIVILGKVSFTVYLYAFTXXXXXXXXXXXXXHC--RLFATVDPRVR 351
           VGYTNAGKSTL+S     L K +                      +C  RLFAT+DP ++
Sbjct: 351 VGYTNAGKSTLIS----ALTKTAL---------------------YCNERLFATLDPTLK 385

Query: 352 SAVLPSGRKVLLSDTVGFISDLPVQLVEAFHATLEEVVEADLLVHVVDSSAPNLDEHRST 411
           SA LPSG  VLLSDTVGFISDLP+QLV+AF +TLEEVVEADLL+HVVDS+APN++EHRST
Sbjct: 386 SAHLPSGNFVLLSDTVGFISDLPIQLVKAFQSTLEEVVEADLLLHVVDSTAPNIEEHRST 445

Query: 412 VFQVLQQIGVSEEKLQNMIEVWNKIXXXXXXXXXXXXXXXXXXXXXXXXXXXTSMITAEN 471
           V  VL QIGV EEKLQNMIEVWNKI                                  +
Sbjct: 446 VLHVLNQIGVPEEKLQNMIEVWNKI-------DYEEDEVEEEKYLDDGEGVGEEDEDEAD 498

Query: 472 EGTEEPEYVCERSLGDLEAVEEKEDYSDGWLYEDTLVNEDDFCSPSSAADPQNESSKDNV 531
              EE     E ++ + +      D +DGW     L++ED+     +A DP  E  K   
Sbjct: 499 LKAEETVDASEATVDEDQIQNGDGDDADGW-----LLSEDE-----NADDP--EFWKVPE 546

Query: 532 VEKYSSMGPPAPHVKTSAVMGVGLQELLELIDEKLSAQDKKLKGAQVVERNNIFHKKWRP 591
           V K  +     P V+ SA+ GVGL+ELL LID+K+  ++KKLK   +VER+ +  +KWRP
Sbjct: 547 VAKVDAANKKGPDVRVSALTGVGLKELLYLIDDKM--KEKKLKSPTIVERSELHKRKWRP 604

Query: 592 SHTEN 596
              ++
Sbjct: 605 PRNDD 609


>AT5G57960.1 | Symbols:  | GTP-binding protein, HflX |
           chr5:23463133-23466481 REVERSE LENGTH=540
          Length = 540

 Score =  114 bits (286), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 137/324 (42%), Gaps = 57/324 (17%)

Query: 115 PRADTYFGPGTVDNIKCNLRAAEDKDGVDAVFVNTILSGVQQRNLERAW--DKPVLDRVG 172
           P   TY G G V  IK  + A +    V+ V  +  LS  Q RNLE+A+  D  V DR  
Sbjct: 163 PNPRTYIGSGKVAEIKSAINALD----VETVIFDDELSPGQLRNLEKAFGGDVRVCDRTA 218

Query: 173 LIIEIFNAHAFTXXXXXXXXXXXXSFKKTXXXXXXXXXXXXTFGAHGETEVVXXXXXXXX 232
           LI++IFN  A T             ++              + G                
Sbjct: 219 LILDIFNQRAATHEAALQVALAQMEYQLPRLTRMWTHLERQSGG---------------- 262

Query: 233 XXXXXXXXXETEXXXXXXXXXXXXXXXXTQIEEVRRTRALQRAGRKRHGGSLGQGLATVA 292
                    E +                 ++E VR+ R   R+ R      +   +  V+
Sbjct: 263 ---QVKGMGEKQIEVDKRILRTQIGVLKKELESVRKHRKQYRSRR------VAIPVPVVS 313

Query: 293 VVGYTNAGKSTLVSECIVILGKVSFTVYLYAFTXXXXXXXXXXXXXHCRLFATVDPRVRS 352
           +VGYTNAGKSTL+++                                 RLFAT+DP  R 
Sbjct: 314 LVGYTNAGKSTLLNQL-----------------------TGANVLAENRLFATLDPTTRR 350

Query: 353 AVLPSGRKVLLSDTVGFISDLPVQLVEAFHATLEEVVEADLLVHVVDSSAPNLDEHRSTV 412
             + +G++ LL+DTVGFI  LP  LV AF ATLEE+ E+ LLVHVVD S P  ++    V
Sbjct: 351 VQMQNGKEFLLTDTVGFIQKLPTTLVAAFRATLEEIAESSLLVHVVDISHPLAEQQIEAV 410

Query: 413 FQVLQQIGVSEEKLQNMIEVWNKI 436
            +V+ ++ VS   +  ++ VWNK+
Sbjct: 411 EKVMSELDVSS--IPKLV-VWNKV 431