Miyakogusa Predicted Gene
- Lj0g3v0102139.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0102139.1 tr|F2CTA3|F2CTA3_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2
SV=1,39.92,1e-18,seg,NULL,CUFF.5753.1
(420 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G54500.2 | Symbols: | BEST Arabidopsis thaliana protein matc... 211 5e-55
AT3G54500.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 211 7e-55
AT3G54500.4 | Symbols: | FUNCTIONS IN: molecular_function unkno... 211 9e-55
AT3G54500.3 | Symbols: | FUNCTIONS IN: molecular_function unkno... 211 1e-54
AT5G64170.1 | Symbols: | dentin sialophosphoprotein-related | c... 98 9e-21
AT5G64170.2 | Symbols: | dentin sialophosphoprotein-related | c... 98 1e-20
AT3G12320.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 55 8e-08
>AT3G54500.2 | Symbols: | BEST Arabidopsis thaliana protein match
is: dentin sialophosphoprotein-related
(TAIR:AT5G64170.1); Has 162 Blast hits to 160 proteins
in 41 species: Archae - 0; Bacteria - 0; Metazoa - 23;
Fungi - 11; Plants - 118; Viruses - 0; Other Eukaryotes
- 10 (source: NCBI BLink). | chr3:20175792-20178275
REVERSE LENGTH=569
Length = 569
Score = 211 bits (538), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 136/295 (46%), Positives = 178/295 (60%), Gaps = 27/295 (9%)
Query: 86 YQNIINPYATSSVYRDV-NTYPDMPMLSHIHSGDVGCQPVHSGYEVSPCMVNPLMNSVD- 143
Y ++ N Y +S + ++ N Y +P++S + DV Q +H Y +P + + D
Sbjct: 244 YSHMPNQYMANSAFGNLANPYSSVPVISAVQHPDVRNQLMHPSY--NPATATSVNMATDA 301
Query: 144 SVKPQTMTPQEKIEKLRRRQQIQAMLAIQKQQQELSHQVPSTSKSISKKCPAEIQSHLCD 203
S +P TMTPQEK+EKLRRRQQ+QAMLAIQ+QQQ+ SHQVP +SI++ C +I L D
Sbjct: 302 SARPSTMTPQEKLEKLRRRQQMQAMLAIQRQQQQFSHQVPVADQSITQNCLQDIPLQLVD 361
Query: 204 GTD-------PEFDDLRTLSALDLPIEQDDSNTISLAIDNDFVEETVLNRLQDIISKLDI 256
T+ P FD +L EQDDS + A+DN E VL RLQD+++KLD+
Sbjct: 362 KTNLQGLTAMPSFDPSSSL-------EQDDSGKFAAAVDNS-AEFAVLYRLQDVVAKLDM 413
Query: 257 RIRLCIRDSLFRLAQSAIQRHYASDLSSANKGSK-ELEVITGVERNSQSRHARKPDVETE 315
R CIRDSLFRLA SA QRHY SD S +NK S+ + EVI E S+ R+A PD E
Sbjct: 414 GTRTCIRDSLFRLAGSAAQRHYTSDTSHSNKTSQDDQEVIPREE--SRYRYAGMPDTEAV 471
Query: 316 TNPIDRTVAHLLFHRPID-FTGNYSDKLESPSSTKVQCESKAANLVNFPETCLPE 369
TNP DRTVAHLLFHRP D + ESP+S+K+ E K NFP+ + E
Sbjct: 472 TNPTDRTVAHLLFHRPFDMLAAKRMEGPESPASSKMGTEEKG----NFPKCSIRE 522
>AT3G54500.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: dentin sialophosphoprotein-related
(TAIR:AT5G64170.1); Has 183 Blast hits to 175 proteins
in 44 species: Archae - 0; Bacteria - 4; Metazoa - 38;
Fungi - 11; Plants - 120; Viruses - 0; Other Eukaryotes
- 10 (source: NCBI BLink). | chr3:20175792-20178737
REVERSE LENGTH=648
Length = 648
Score = 211 bits (537), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 134/290 (46%), Positives = 178/290 (61%), Gaps = 17/290 (5%)
Query: 86 YQNIINPYATSSVYRDV-NTYPDMPMLSHIHSGDVGCQPVHSGYEVSPCMVNPLMNSVD- 143
Y ++ N Y +S + ++ N Y +P++S + DV Q +H Y +P + + D
Sbjct: 323 YSHMPNQYMANSAFGNLANPYSSVPVISAVQHPDVRNQLMHPSY--NPATATSVNMATDA 380
Query: 144 SVKPQTMTPQEKIEKLRRRQQIQAMLAIQKQQQELSHQVPSTSKSISKKCPAEIQSHLCD 203
S +P TMTPQEK+EKLRRRQQ+QAMLAIQ+QQQ+ SHQVP +SI++ C +I L D
Sbjct: 381 SARPSTMTPQEKLEKLRRRQQMQAMLAIQRQQQQFSHQVPVADQSITQNCLQDIPLQLVD 440
Query: 204 GTDPEFDDLRTLSALD--LPIEQDDSNTISLAIDNDFVEETVLNRLQDIISKLDIRIRLC 261
T+ L + + D +EQDDS + A+DN E VL RLQD+++KLD+ R C
Sbjct: 441 KTN--LQGLTAMPSFDPSSSLEQDDSGKFAAAVDNS-AEFAVLYRLQDVVAKLDMGTRTC 497
Query: 262 IRDSLFRLAQSAIQRHYASDLSSANKGSK-ELEVITGVERNSQSRHARKPDVETETNPID 320
IRDSLFRLA SA QRHY SD S +NK S+ + EVI E S+ R+A PD E TNP D
Sbjct: 498 IRDSLFRLAGSAAQRHYTSDTSHSNKTSQDDQEVIPREE--SRYRYAGMPDTEAVTNPTD 555
Query: 321 RTVAHLLFHRPID-FTGNYSDKLESPSSTKVQCESKAANLVNFPETCLPE 369
RTVAHLLFHRP D + ESP+S+K+ E K NFP+ + E
Sbjct: 556 RTVAHLLFHRPFDMLAAKRMEGPESPASSKMGTEEKG----NFPKCSIRE 601
>AT3G54500.4 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: dentin
sialophosphoprotein-related (TAIR:AT5G64170.2). |
chr3:20175792-20178737 REVERSE LENGTH=663
Length = 663
Score = 211 bits (536), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 134/290 (46%), Positives = 178/290 (61%), Gaps = 17/290 (5%)
Query: 86 YQNIINPYATSSVYRDV-NTYPDMPMLSHIHSGDVGCQPVHSGYEVSPCMVNPLMNSVD- 143
Y ++ N Y +S + ++ N Y +P++S + DV Q +H Y +P + + D
Sbjct: 338 YSHMPNQYMANSAFGNLANPYSSVPVISAVQHPDVRNQLMHPSY--NPATATSVNMATDA 395
Query: 144 SVKPQTMTPQEKIEKLRRRQQIQAMLAIQKQQQELSHQVPSTSKSISKKCPAEIQSHLCD 203
S +P TMTPQEK+EKLRRRQQ+QAMLAIQ+QQQ+ SHQVP +SI++ C +I L D
Sbjct: 396 SARPSTMTPQEKLEKLRRRQQMQAMLAIQRQQQQFSHQVPVADQSITQNCLQDIPLQLVD 455
Query: 204 GTDPEFDDLRTLSALD--LPIEQDDSNTISLAIDNDFVEETVLNRLQDIISKLDIRIRLC 261
T+ L + + D +EQDDS + A+DN E VL RLQD+++KLD+ R C
Sbjct: 456 KTN--LQGLTAMPSFDPSSSLEQDDSGKFAAAVDNS-AEFAVLYRLQDVVAKLDMGTRTC 512
Query: 262 IRDSLFRLAQSAIQRHYASDLSSANKGSK-ELEVITGVERNSQSRHARKPDVETETNPID 320
IRDSLFRLA SA QRHY SD S +NK S+ + EVI E S+ R+A PD E TNP D
Sbjct: 513 IRDSLFRLAGSAAQRHYTSDTSHSNKTSQDDQEVIPREE--SRYRYAGMPDTEAVTNPTD 570
Query: 321 RTVAHLLFHRPID-FTGNYSDKLESPSSTKVQCESKAANLVNFPETCLPE 369
RTVAHLLFHRP D + ESP+S+K+ E K NFP+ + E
Sbjct: 571 RTVAHLLFHRPFDMLAAKRMEGPESPASSKMGTEEKG----NFPKCSIRE 616
>AT3G54500.3 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: dentin
sialophosphoprotein-related (TAIR:AT5G64170.1). |
chr3:20175792-20178482 REVERSE LENGTH=669
Length = 669
Score = 211 bits (536), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 134/290 (46%), Positives = 178/290 (61%), Gaps = 17/290 (5%)
Query: 86 YQNIINPYATSSVYRDV-NTYPDMPMLSHIHSGDVGCQPVHSGYEVSPCMVNPLMNSVD- 143
Y ++ N Y +S + ++ N Y +P++S + DV Q +H Y +P + + D
Sbjct: 344 YSHMPNQYMANSAFGNLANPYSSVPVISAVQHPDVRNQLMHPSY--NPATATSVNMATDA 401
Query: 144 SVKPQTMTPQEKIEKLRRRQQIQAMLAIQKQQQELSHQVPSTSKSISKKCPAEIQSHLCD 203
S +P TMTPQEK+EKLRRRQQ+QAMLAIQ+QQQ+ SHQVP +SI++ C +I L D
Sbjct: 402 SARPSTMTPQEKLEKLRRRQQMQAMLAIQRQQQQFSHQVPVADQSITQNCLQDIPLQLVD 461
Query: 204 GTDPEFDDLRTLSALD--LPIEQDDSNTISLAIDNDFVEETVLNRLQDIISKLDIRIRLC 261
T+ L + + D +EQDDS + A+DN E VL RLQD+++KLD+ R C
Sbjct: 462 KTN--LQGLTAMPSFDPSSSLEQDDSGKFAAAVDNS-AEFAVLYRLQDVVAKLDMGTRTC 518
Query: 262 IRDSLFRLAQSAIQRHYASDLSSANKGSK-ELEVITGVERNSQSRHARKPDVETETNPID 320
IRDSLFRLA SA QRHY SD S +NK S+ + EVI E S+ R+A PD E TNP D
Sbjct: 519 IRDSLFRLAGSAAQRHYTSDTSHSNKTSQDDQEVIPREE--SRYRYAGMPDTEAVTNPTD 576
Query: 321 RTVAHLLFHRPID-FTGNYSDKLESPSSTKVQCESKAANLVNFPETCLPE 369
RTVAHLLFHRP D + ESP+S+K+ E K NFP+ + E
Sbjct: 577 RTVAHLLFHRPFDMLAAKRMEGPESPASSKMGTEEKG----NFPKCSIRE 622
>AT5G64170.1 | Symbols: | dentin sialophosphoprotein-related |
chr5:25672904-25675445 REVERSE LENGTH=566
Length = 566
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 70/105 (66%), Gaps = 7/105 (6%)
Query: 227 SNTISLAIDNDFVEETVLNRLQDIISKLDIRIRLCIRDSLFRLAQSAIQRHYASDLSSAN 286
S+ +S +D+ +E T +LQ +I +LD+R +LCIRDSL+RLA+SA QRH+ +
Sbjct: 417 SSCVSSVVDDISLEATSFRQLQQVIEQLDVRTKLCIRDSLYRLAKSAEQRHHGGNRPEKG 476
Query: 287 KGSKELEVITGVERNSQSRHARKPDVETETNPIDRTVAHLLFHRP 331
GS ++TG ++A D+ET+TNPIDR++AHLLFHRP
Sbjct: 477 AGS---HLVTG----EADKYAGFMDIETDTNPIDRSIAHLLFHRP 514
>AT5G64170.2 | Symbols: | dentin sialophosphoprotein-related |
chr5:25672904-25675934 REVERSE LENGTH=616
Length = 616
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 70/105 (66%), Gaps = 7/105 (6%)
Query: 227 SNTISLAIDNDFVEETVLNRLQDIISKLDIRIRLCIRDSLFRLAQSAIQRHYASDLSSAN 286
S+ +S +D+ +E T +LQ +I +LD+R +LCIRDSL+RLA+SA QRH+ +
Sbjct: 467 SSCVSSVVDDISLEATSFRQLQQVIEQLDVRTKLCIRDSLYRLAKSAEQRHHGGNRPEKG 526
Query: 287 KGSKELEVITGVERNSQSRHARKPDVETETNPIDRTVAHLLFHRP 331
GS ++TG ++A D+ET+TNPIDR++AHLLFHRP
Sbjct: 527 AGS---HLVTG----EADKYAGFMDIETDTNPIDRSIAHLLFHRP 564
>AT3G12320.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G06980.4); Has 102 Blast hits to 102 proteins
in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes -
4 (source: NCBI BLink). | chr3:3924034-3925262 FORWARD
LENGTH=269
Length = 269
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 6/92 (6%)
Query: 240 EETVLNRLQDIISKLDIRIRLCIRDSLFRLAQSAIQRHYASDLSSANKGSKELEVITG-V 298
EE VL LQ KL R C RD+ +RLA+S+ + SD S N S+EL + T
Sbjct: 168 EEFVLQDLQRASQKLTDETRKCFRDTFYRLARSSQDK---SDSVSPN--SEELLMQTSRY 222
Query: 299 ERNSQSRHARKPDVETETNPIDRTVAHLLFHR 330
+ +R +R+ ++E+ETN IDR VA+L F++
Sbjct: 223 DYGDGNRFSREEEIESETNSIDRAVANLTFNK 254