Miyakogusa Predicted Gene
- Lj0g3v0101179.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0101179.1 Non Chatacterized Hit- tr|K3YJX5|K3YJX5_SETIT
Uncharacterized protein OS=Setaria italica GN=Si014544,35.9,5e-19,The
RING-variant domain is a C4HC3 zinc-fing,Zinc finger, RING-CH-type;
Ring finger,Zinc finger, RIN,CUFF.5672.1
(466 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57565 similar to UniRef100_A7Q2X1 Cluster: Chromosome... 908 0.0
gnl|LJGI|TC67597 similar to UniRef100_A7Q2X1 Cluster: Chromosome... 178 2e-44
>gnl|LJGI|TC57565 similar to UniRef100_A7Q2X1 Cluster: Chromosome chr12 scaffold_47,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr12 scaffold_47, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (69%)
Length = 1012
Score = 908 bits (458), Expect = 0.0
Identities = 464/466 (99%)
Strand = Plus / Plus
Query: 1 atgggcctatcaagtctcccagcaccttctgaaggagtgttatgtataattctggtgaac 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 281 atgggcctatcaagtctcccagcaccttctgaaggagtgttatgtgtaattctggtgaac 340
Query: 61 actgcaatgtcaatatctatagttaaagccatttttaggacattccttcacattgttggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 actgcaatgtcaatatctatagttaaagccatttttaggacattccttcacattgttggt 400
Query: 121 atccatgtttcatcaccctcccctccaacagaaaactcccaaaacccacctgatccatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 atccatgtttcatcaccctcccctccaacagaaaactcccaaaacccacctgatccatct 460
Query: 181 gagttccaatatctcagtccctcagagggtttcattgaagacttcagaagcaagacacca 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 461 gagttccaatatctcagtccctcagagggtttcattgaaggcttcagaagcaagacacca 520
Query: 241 acgcttaggtttgagagtgtgtgtagcagttgcaaacaacaacctgaacatgagtgttca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 acgcttaggtttgagagtgtgtgtagcagttgcaaacaacaacctgaacatgagtgttca 580
Query: 301 gtgtgtctcactaaatttgaaccagaatcagagataaactgtttaccttgtggccatctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gtgtgtctcactaaatttgaaccagaatcagagataaactgtttaccttgtggccatctc 640
Query: 361 ttccataaagcatgcttggagaaatggttggactattggaacattacgtgcccactttgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ttccataaagcatgcttggagaaatggttggactattggaacattacgtgcccactttgc 700
Query: 421 aggactcccttaatgcctgaagatgatgcatcttgcttttggtaag 466
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 aggactcccttaatgcctgaagatgatgcatcttgcttttggtaag 746
>gnl|LJGI|TC67597 similar to UniRef100_A7Q2X1 Cluster: Chromosome chr12 scaffold_47,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr12 scaffold_47, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (62%)
Length = 967
Score = 178 bits (90), Expect = 2e-44
Identities = 358/447 (80%), Gaps = 19/447 (4%)
Strand = Plus / Plus
Query: 1 atgggcctatcaagtctcccagcaccttctgaaggagtgttatgtataattctggtgaac 60
||||| || ||||||||||||||||| |||||||||||||||||| | |||| ||||||
Sbjct: 242 atgggtctctcaagtctcccagcaccatctgaaggagtgttatgtgtgcttcttgtgaac 301
Query: 61 actgcaatgtcaatatctatagttaaagccatttttaggacattccttcacattgttggt 120
|||| ||||| || || ||| | |||| |||| | || ||| | || ||||||||||||
Sbjct: 302 actgtgatgtccatttccatattcaaaggcattgtcagaacaattctacacattgttggt 361
Query: 121 atccatgtttcatcaccctcccctccaacagaaaactcccaaaacccacctgatccatct 180
|||||| |||| ||||| ||| |||||||||||||||||| ||| |
Sbjct: 362 atccatctttcttcacc------------agatgcctcccaaaacccacctgaatcattt 409
Query: 181 gagttccaatatctcagtccctcagagggtttcattgaagacttcagaagcaagacacca 240
|| |||| |||||| ||||| ||| ||| ||||||||| |||||||||| ||| |||
Sbjct: 410 gaagtcca---tctcagcccctctgagagttacattgaagagttcagaagcaggactcca 466
Query: 241 acgcttaggtttgagagtgtgtgtagcagttgcaaacaacaacctgaacatgagtgttca 300
|| ||||| ||||| ||||| ||| ||||| |||| ||| ||| ||| |||||
Sbjct: 467 acacttagatttgacagtgtttgttgcagtaagcaacatgaacatga---tgactgttct 523
Query: 301 gtgtgtctcactaaatttgaaccagaatcagagataaactgtttaccttgtggccatctc 360
|| ||||| || | ||||||||||| |||||||| ||| |||| | ||||||||||||
Sbjct: 524 gtttgtcttgctcagtttgaaccagattcagagattaaccgtttgtcctgtggccatctc 583
Query: 361 ttccataaagcatgcttgg-agaaatggttggactattggaacattacgtgcccactttg 419
|||||||||| ||||||| |||| ||||||||||| ||||||||||| ||||| |||||
Sbjct: 584 ttccataaagtttgcttgggagaagtggttggactactggaacattacatgccctctttg 643
Query: 420 caggactcccttaatgcctgaagatga 446
||||||||| |||||||||||||||||
Sbjct: 644 caggactccattaatgcctgaagatga 670