Miyakogusa Predicted Gene

Lj0g3v0096059.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0096059.1 Non Characterized Hit- tr|D8SKT2|D8SKT2_SELML
Putative uncharacterized protein OS=Selaginella
moelle,40.94,3e-18,RAB3-GAP REGULATORY DOMAIN,Rab3-GAP regulatory
subunit,CUFF.5363.1
         (128 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g464030.3 | Rab3 GTPase-activating protein non-catalytic s...   210   2e-55
Medtr8g464030.2 | Rab3 GTPase-activating protein non-catalytic s...   210   3e-55
Medtr8g464030.1 | Rab3 GTPase-activating protein non-catalytic s...   210   3e-55

>Medtr8g464030.3 | Rab3 GTPase-activating protein non-catalytic
           subunit | HC | chr8:22605130-22609062 | 20130731
          Length = 501

 Score =  210 bits (535), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 98/120 (81%), Positives = 109/120 (90%)

Query: 1   MTGVIARFDSSDIQNMLQKWFEESQSQLWNQKPKREDSEDFEHSHVKLPYQVWNVGKYGT 60
           M GVIARFD S +QNMLQKWFEE+ +QLWNQK K +DSEDF++S  KLPYQ+WN+GKYGT
Sbjct: 152 MPGVIARFDGSVVQNMLQKWFEEAHAQLWNQKQKGQDSEDFDNSQQKLPYQLWNIGKYGT 211

Query: 61  CADAAITGIMPPPLMEQQSSQRYYCAVAVGEDAVISAYRLSEEKGRSLGGAILSKGVPCS 120
           CADAAITGIMPPPLMEQQSSQRYYCAVAVG+DAVISAYRLSE+KGRSL GAILSK VP +
Sbjct: 212 CADAAITGIMPPPLMEQQSSQRYYCAVAVGDDAVISAYRLSEDKGRSLVGAILSKVVPAT 271


>Medtr8g464030.2 | Rab3 GTPase-activating protein non-catalytic
           subunit | HC | chr8:22605130-22609062 | 20130731
          Length = 346

 Score =  210 bits (535), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 98/120 (81%), Positives = 109/120 (90%)

Query: 1   MTGVIARFDSSDIQNMLQKWFEESQSQLWNQKPKREDSEDFEHSHVKLPYQVWNVGKYGT 60
           M GVIARFD S +QNMLQKWFEE+ +QLWNQK K +DSEDF++S  KLPYQ+WN+GKYGT
Sbjct: 34  MPGVIARFDGSVVQNMLQKWFEEAHAQLWNQKQKGQDSEDFDNSQQKLPYQLWNIGKYGT 93

Query: 61  CADAAITGIMPPPLMEQQSSQRYYCAVAVGEDAVISAYRLSEEKGRSLGGAILSKGVPCS 120
           CADAAITGIMPPPLMEQQSSQRYYCAVAVG+DAVISAYRLSE+KGRSL GAILSK VP +
Sbjct: 94  CADAAITGIMPPPLMEQQSSQRYYCAVAVGDDAVISAYRLSEDKGRSLVGAILSKVVPAT 153


>Medtr8g464030.1 | Rab3 GTPase-activating protein non-catalytic
           subunit | HC | chr8:22605130-22609044 | 20130731
          Length = 464

 Score =  210 bits (534), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 98/120 (81%), Positives = 109/120 (90%)

Query: 1   MTGVIARFDSSDIQNMLQKWFEESQSQLWNQKPKREDSEDFEHSHVKLPYQVWNVGKYGT 60
           M GVIARFD S +QNMLQKWFEE+ +QLWNQK K +DSEDF++S  KLPYQ+WN+GKYGT
Sbjct: 152 MPGVIARFDGSVVQNMLQKWFEEAHAQLWNQKQKGQDSEDFDNSQQKLPYQLWNIGKYGT 211

Query: 61  CADAAITGIMPPPLMEQQSSQRYYCAVAVGEDAVISAYRLSEEKGRSLGGAILSKGVPCS 120
           CADAAITGIMPPPLMEQQSSQRYYCAVAVG+DAVISAYRLSE+KGRSL GAILSK VP +
Sbjct: 212 CADAAITGIMPPPLMEQQSSQRYYCAVAVGDDAVISAYRLSEDKGRSLVGAILSKVVPAT 271