Miyakogusa Predicted Gene

Lj0g3v0096059.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0096059.1 Non Chatacterized Hit- tr|D8SKT2|D8SKT2_SELML
Putative uncharacterized protein OS=Selaginella
moelle,40.94,3e-18,RAB3-GAP REGULATORY DOMAIN,Rab3-GAP regulatory
subunit,CUFF.5363.1
         (128 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G14910.1 | Symbols:  | unknown protein; Has 158 Blast hits to...   172   6e-44

>AT3G14910.1 | Symbols:  | unknown protein; Has 158 Blast hits to
           158 proteins in 77 species: Archae - 0; Bacteria - 0;
           Metazoa - 104; Fungi - 0; Plants - 33; Viruses - 0;
           Other Eukaryotes - 21 (source: NCBI BLink). |
           chr3:5015432-5017566 FORWARD LENGTH=455
          Length = 455

 Score =  172 bits (435), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 76/120 (63%), Positives = 96/120 (80%)

Query: 1   MTGVIARFDSSDIQNMLQKWFEESQSQLWNQKPKREDSEDFEHSHVKLPYQVWNVGKYGT 60
           + GVIARFD S+IQ+M+QKW +E  S  W+QK ++ D+ED    + +LPYQ+WNV K G 
Sbjct: 147 LPGVIARFDGSNIQSMVQKWVQEKNSNFWDQKNRKGDAEDTGSLYQRLPYQIWNVNKNGV 206

Query: 61  CADAAITGIMPPPLMEQQSSQRYYCAVAVGEDAVISAYRLSEEKGRSLGGAILSKGVPCS 120
           C DA +TG+MPPPL+E QSSQRYYCAV +GED+VISAYRLSE++GRSL GAILSK VP +
Sbjct: 207 CVDATVTGVMPPPLLELQSSQRYYCAVTIGEDSVISAYRLSEDRGRSLVGAILSKVVPAA 266