Miyakogusa Predicted Gene

Lj0g3v0096059.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0096059.1 Non Chatacterized Hit- tr|D8SKT2|D8SKT2_SELML
Putative uncharacterized protein OS=Selaginella
moelle,40.94,3e-18,RAB3-GAP REGULATORY DOMAIN,Rab3-GAP regulatory
subunit,CUFF.5363.1
         (390 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC76274 weakly similar to UniRef100_A7P201 Cluster: Chr...   591   e-168
gnl|LJGI|TC72790 similar to UniRef100_A7P201 Cluster: Chromosome...   448   e-125

>gnl|LJGI|TC76274 weakly similar to UniRef100_A7P201 Cluster: Chromosome chr19
           scaffold_4, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr19 scaffold_4, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (54%)
          Length = 905

 Score =  591 bits (298), Expect = e-168
 Identities = 298/298 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   ctggtgtgattgcccgttttgatagctctgatattcagaatatgctgcagaaatggtttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ctggtgtgattgcccgttttgatagctctgatattcagaatatgctgcagaaatggtttg 667

                                                                       
Query: 65  aagaatcgcaatctcagttatggaatcaaaagccaaagagggaagattcagaggattttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aagaatcgcaatctcagttatggaatcaaaagccaaagagggaagattcagaggattttg 727

                                                                       
Query: 125 aacattcccatgtgaaattaccttaccaggtgtggaatgttggcaagtatggtacttgtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 aacattcccatgtgaaattaccttaccaggtgtggaatgttggcaagtatggtacttgtg 787

                                                                       
Query: 185 ctgatgccgcaatcactgggataatgcctccaccactgatggaacagcagtcaagtcaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ctgatgccgcaatcactgggataatgcctccaccactgatggaacagcagtcaagtcaac 847

                                                                     
Query: 245 gttattattgtgcagtggctgttggagaggatgctgtgatttcagcttacagactttc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 gttattattgtgcagtggctgttggagaggatgctgtgatttcagcttacagactttc 905


>gnl|LJGI|TC72790 similar to UniRef100_A7P201 Cluster: Chromosome chr19 scaffold_4,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr19 scaffold_4, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (38%)
          Length = 793

 Score =  448 bits (226), Expect = e-125
 Identities = 229/230 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   ctggtgtgattgcccgttttgatagctctgatattcagaatatgctgcagaaatggtttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ctggtgtgattgcccgttttgatagctctgatattcagaatatgctgcagaaatggtttg 568

                                                                       
Query: 65  aagaatcgcaatctcagttatggaatcaaaagccaaagagggaagattcagaggattttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aagaatcgcaatctcagttatggaatcaaaagccaaagagggaagattcagaggattttg 628

                                                                       
Query: 125 aacattcccatgtgaaattaccttaccaggtgtggaatgttggcaagtatggtacttgtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 aacattcccatgtgaaattaccttaccaggtgtggaatgttggcaagtatggtacttgtg 688

                                                             
Query: 185 ctgatgccgcaatcactgggataatgcctccaccactgatggaacagcag 234
           ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 689 ctgatgccgcaatcactgggacaatgcctccaccactgatggaacagcag 738