Miyakogusa Predicted Gene

Lj0g3v0092039.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0092039.1 tr|F2EGT7|F2EGT7_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2
SV=1,33.48,6e-16,Tmemb_161AB,Transmembrane protein 161A/B;
seg,NULL,CUFF.5026.1
         (456 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52180.1 | Symbols:  | LOCATED IN: endomembrane system; EXPRE...   408   e-114

>AT5G52180.1 | Symbols:  | LOCATED IN: endomembrane system;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane
           protein 161AB, predicted (InterPro:IPR019395); Has 82
           Blast hits to 82 proteins in 35 species: Archae - 0;
           Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 33;
           Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
           | chr5:21200165-21201541 REVERSE LENGTH=458
          Length = 458

 Score =  408 bits (1049), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 233/468 (49%), Positives = 309/468 (66%), Gaps = 22/468 (4%)

Query: 1   MLHFLLSYKNPLLQASLSLTLAFILAFFRIPIFFLHGLQTYIHPDSQPQSN---GLRAAI 57
           ML  L SY+N  LQ  LSL L  +L+F +I I FLHGL TYI P++  Q+N   GLR AI
Sbjct: 1   MLELLGSYRNLTLQILLSLFLTLVLSFVKISIIFLHGLCTYIQPENLNQNNTGNGLRPAI 60

Query: 58  RRPGIDNYQPLSSKTSAELRKRSKAKDKVDFDENNAQIFRLRLDEGHLQSRLYVDQYCAA 117
           RRP   +      K++ E+R+R+++KDK +FDE+NAQIFR++LDE HL+SR+Y  +Y + 
Sbjct: 61  RRPSSTD----DPKSNVEVRRRNRSKDKSEFDESNAQIFRIKLDEDHLRSRMYFTEYNSL 116

Query: 118 FTVSFVALFSILVHSFLDSKED--HGLLKTGVIVPXXXXXXXXYSWGSTLAKTAFERSAS 175
           F +SF+A+   L+  +    ED  HG+L  G++ P              L K + ERSAS
Sbjct: 117 FVISFLAVSCFLLDKYFGIIEDNSHGVLSNGLMFPIVLGFIALCKVFVALGKISIERSAS 176

Query: 176 RRSEKQLSIVFGVLGVFLGLMF----VPEGASLVLDFHFGVPVDGPMRVFIAALMGCLAG 231
           + SEK+LS++FGVLG   G++      P+G     DF  G  VD    + I+  M C+ G
Sbjct: 177 KESEKRLSLIFGVLGFVFGIIISAGVFPKG----FDFQLG-SVDAFCCIVISFSMACIGG 231

Query: 232 FLFIPAGRSARCFWLGTDQIRCNLSMITCGWFASTILYANQLLVIFVALLWITPLSEIFV 291
           FL++PAGRSAR FW+GTDQIR NLS+I+CGWF   ILYAN ++ +F +LLWI PL+E+ V
Sbjct: 232 FLYMPAGRSARSFWVGTDQIRSNLSIISCGWFGRMILYANYIVSVFTSLLWIHPLAEVLV 291

Query: 292 NTNYNNNKGGSGIGSAEKLVGNLGFLPSDFSNFRRWCLLGSSLLQIVAVRLNLQMYLNEA 351
             +  +        S   LVGN+G L  DF+ FR  CLL S LLQ +AVR NLQM+LNEA
Sbjct: 292 KRS-GDPGTSGSSQSQSGLVGNVGMLSDDFAKFRVLCLLLSGLLQAMAVRPNLQMFLNEA 350

Query: 352 LLSWYQRLHVSKVPDLDYSRAKMFLHNHYVCLVVLQFLGPPMLVLVFLGLSQIDSPSFGN 411
           +LSWYQRLH SK PDLD+SRAKMFLHNHY+CLV LQFL P +LV++FLGLSQID  SF  
Sbjct: 351 VLSWYQRLHGSKTPDLDFSRAKMFLHNHYLCLVALQFLAPSVLVILFLGLSQIDLSSFAV 410

Query: 412 LPSI---LPSSTFVKEVALFFAWWVNFLWAIYSSVILMLHRHCILYVS 456
              +   LP S F+K+V L  +WWV F+W+ ++S  L+ +R  +LYVS
Sbjct: 411 SQLVCGSLPCSDFIKQVGLLMSWWVLFVWSGFTSASLVFYRRGVLYVS 458