Miyakogusa Predicted Gene

Lj0g3v0086289.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0086289.1 tr|B9H1A9|B9H1A9_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_758404 PE=4
SV=1,51.24,1e-16,seg,NULL,CUFF.4576.1
         (539 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g023280.1 | DUO pollen-like protein, putative | HC | chr2:...   560   e-159

>Medtr2g023280.1 | DUO pollen-like protein, putative | HC |
           chr2:8187592-8196160 | 20130731
          Length = 1249

 Score =  560 bits (1444), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 313/544 (57%), Positives = 351/544 (64%), Gaps = 33/544 (6%)

Query: 1   MISQSETNQEKEIGLTSAVDGNGFRRGELDKATKSRSPVIDIDSDDAICKRTRARYSLAS 60
           MISQ E ++EK+  L S    +GFR  ++   TK RSPVIDID++DAIC RTRARYSL  
Sbjct: 119 MISQLEIDKEKKNDLISGT-SDGFRIEDISNTTKPRSPVIDIDTEDAICMRTRARYSLEG 177

Query: 61  FXXXXXXXXXXXXXXXXXXXXXXXXXXYKKFLAAVLQDGDGDGLSTHGXXXXXXXXXXXX 120
           F                          YKKFLAAVLQ G+ DGLS+H             
Sbjct: 178 FSLDELETFLQETDDEDDVQNVDDEEEYKKFLAAVLQGGERDGLSSH-ENENLDDDEDND 236

Query: 121 XXXXXXXXXXXXXXXXXNAVVKTQKEYDGAGRRPETRQNKRRKVSAQSERKTLGQFNRPL 180
                            NA V+T+ E DGAGRRP+TRQN RRK S+QSERKT GQ NRPL
Sbjct: 237 ADFELELQELLDSDADENAAVETRNECDGAGRRPKTRQNNRRKSSSQSERKTFGQVNRPL 296

Query: 181 RPILPNWQNEPPASGKDLMPEANLSFQSSASGNAPVNGFTPPQIGQLHSLIHEHVQLLIQ 240
           RPILP W N    SG  LMPEA  S QSSAS N  VNGFTP QIGQL+SLIHEHVQLLIQ
Sbjct: 297 RPILPCWLNGQLVSGNGLMPEATCSIQSSASRNGLVNGFTPQQIGQLYSLIHEHVQLLIQ 356

Query: 241 VFSLSVLDPSQKHTASQVQTLLFEMLHKRDEVLASKRMPYPTVCFTPSFACTSASNGISK 300
           VFSLSVL+PS K  ASQVQ++LFEMLHKRD VLAS R PYP VCFTP             
Sbjct: 357 VFSLSVLEPSHKQVASQVQSMLFEMLHKRDAVLASTRTPYPAVCFTP------------- 403

Query: 301 SVPGQLTKASASTQDVXXXXXXXXXXXXXEDLNRQRSCFQDPESSLRVPSVH----SVLD 356
           SVPGQ    SAS QD              E LN QRSCFQD + S   P V     S+LD
Sbjct: 404 SVPGQCHTGSASIQDAMSVRIPQYHQTSSEGLNGQRSCFQDADGSFWFPIVRGPVLSMLD 463

Query: 357 VSPLNFVRRYVDGIYSASQEFRKRYIESGCEFSFEKEPLFPFSSSFTEASTGVSSGTIPG 416
           V+PLN +R YV+ I SA++EFRKR+IESG +   EKEPLFPFSSS            + G
Sbjct: 464 VAPLNLLRGYVNDINSAAREFRKRFIESGFDQVIEKEPLFPFSSS------------VVG 511

Query: 417 AVRAVSTSPGQQQPKKTLAAMLVEST-KQSSALVPKEVAKLTQKFFLDLFNPELFPHKPP 475
           A   VS+SP ++QPKKTLA MLVES+ KQS ALVPKEVA  TQ+ FL  FNP LFPHKPP
Sbjct: 512 ANSTVSSSPDKKQPKKTLAGMLVESSKKQSIALVPKEVASKTQR-FLAFFNPALFPHKPP 570

Query: 476 PPAVVNRILFTDSEDELLSLGILEYNTDWKAIQQRFLPCKSKHQIFVRQKNRSSAKALEN 535
             A VNR LFTDSEDELL+LGILEYNTDW+AI+QRFLP KS HQIFVRQKNR S+K+ EN
Sbjct: 571 LAASVNRTLFTDSEDELLALGILEYNTDWEAIKQRFLPSKSTHQIFVRQKNRCSSKSSEN 630

Query: 536 PIKV 539
           PIK 
Sbjct: 631 PIKA 634