Miyakogusa Predicted Gene

Lj0g3v0086289.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0086289.1 tr|B9H1A9|B9H1A9_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_758404 PE=4
SV=1,51.24,1e-16,seg,NULL,CUFF.4576.1
         (539 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G64570.1 | Symbols: DUO3 | Homeodomain-like superfamily prote...   178   1e-44

>AT1G64570.1 | Symbols: DUO3 | Homeodomain-like superfamily protein
           | chr1:23978868-23983925 FORWARD LENGTH=1239
          Length = 1239

 Score =  178 bits (451), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 99/191 (51%), Positives = 128/191 (67%), Gaps = 7/191 (3%)

Query: 350 SVHSVLDVSPLNFVRRYVDGIYSASQEFRKRYIESGCEFSFEKEPLFPFSSSFTEASTGV 409
           S  SVLDV  +    RY+  +  A Q++R+  +ESG + S ++ PLF       +   G 
Sbjct: 374 SASSVLDV--VGLAGRYLVDVSDAVQDYRRCQVESGFDTSSQRVPLFTLPH---QEVGGE 428

Query: 410 SSGTIPGAVRAVSTSPGQQQPKKTLAAMLVEST-KQSSALVPKEVAKLTQKFFLDLFNPE 468
                  +  +  +  GQQQ KKTLAA LVES  KQS ALV K++AKL ++F + LF   
Sbjct: 429 IVNYPLSSPSSSKSPSGQQQAKKTLAATLVESAQKQSVALVHKDIAKLAKRF-MPLFKVS 487

Query: 469 LFPHKPPPPAVVNRILFTDSEDELLSLGILEYNTDWKAIQQRFLPCKSKHQIFVRQKNRS 528
           L+PHKPP  AV NR+LFTD+EDELL+LGI+EYN+DWKAI+QRFLP K +HQI+VRQKNR 
Sbjct: 488 LYPHKPPHAAVANRVLFTDAEDELLALGIMEYNSDWKAIKQRFLPSKGEHQIYVRQKNRR 547

Query: 529 SAKALENPIKV 539
           S+KA ENPIK 
Sbjct: 548 SSKAPENPIKA 558



 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 108/231 (46%), Gaps = 9/231 (3%)

Query: 39  VIDIDSDDAICKRTRARYSLASFXXXXXXXXXXXXXXXXXXXXXXXXXXYKKFLAAVLQD 98
           ++  + DDAICKRTRARYSLASF                          Y+KFLAAVL  
Sbjct: 132 LMSTEEDDAICKRTRARYSLASFTLDDLEAFLQETDDEDDIPNVDDEEEYRKFLAAVLHS 191

Query: 99  GDGD-GLSTHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAVVK--TQKEYDGAGRRPE 155
           GD +  L+  G                               + +  T  +     RRP 
Sbjct: 192 GDTEVPLAQTGTNDDDDDDDEDNDLDFEIELEEALETDDEEIIPEKVTTGDNISTKRRPV 251

Query: 156 TRQNKRRKVSAQSERKTLGQFNRPLRPILPNWQNEPPASGKDLMPEANLSFQSSASGNAP 215
           TRQ +R+ +S   +  +  Q  R LRP++P     PP          + +   ++S N  
Sbjct: 252 TRQKRRQNISIHHKNNSPEQAGRLLRPLVPILPIAPPGR------RVSATEAVASSENRT 305

Query: 216 VNGFTPPQIGQLHSLIHEHVQLLIQVFSLSVLDPSQKHTASQVQTLLFEML 266
           +NGFT  Q+G+LHSLIH+H+QLLIQV+SL  LD S++   + VQ LL EML
Sbjct: 306 INGFTQAQMGELHSLIHDHLQLLIQVYSLCALDHSRQSIGTHVQGLLSEML 356