Miyakogusa Predicted Gene
- Lj0g3v0078729.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0078729.1 Non Characterized Hit- tr|C5XDZ1|C5XDZ1_SORBI
Putative uncharacterized protein Sb02g039025
(Fragment,60.26,3e-19,RNA-binding domain, RBD,NULL; RRM_1,RNA
recognition motif domain; RNA recognition motif,RNA
recognit,CUFF.4022.1
(86 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 131 1e-31
Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 84 4e-17
Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 79 1e-15
Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 76 8e-15
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 3e-14
Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 3e-14
Medtr6g477870.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 4e-13
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 1e-11
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 1e-11
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 2e-11
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 2e-11
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 2e-11
Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 64 3e-11
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 4e-11
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 5e-11
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 5e-11
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 6e-11
Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 2e-10
Medtr4g117350.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 4e-10
Medtr7g096260.2 | multiple RNA-binding domain protein | HC | chr... 60 6e-10
Medtr8g077840.4 | U1 small nuclear ribonucleoprotein 70 kDa prot... 60 6e-10
Medtr8g077840.2 | U1 small nuclear ribonucleoprotein 70 kDa prot... 60 6e-10
Medtr8g077840.3 | U1 small nuclear ribonucleoprotein 70 kDa prot... 60 6e-10
Medtr8g077840.1 | U1 small nuclear ribonucleoprotein 70 kDa prot... 60 6e-10
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 6e-10
Medtr7g096260.1 | multiple RNA-binding domain protein | HC | chr... 60 6e-10
Medtr7g094670.1 | mRNA capping enzyme, putative | LC | chr7:3777... 59 9e-10
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-09
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-09
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 2e-09
Medtr8g074790.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 2e-09
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 58 2e-09
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 2e-09
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 57 3e-09
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 3e-09
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 57 4e-09
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 57 4e-09
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 57 4e-09
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 57 5e-09
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 57 5e-09
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 57 5e-09
Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 6e-09
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 1e-08
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 2e-08
Medtr2g090655.1 | nuclear cap-binding protein subunit 2 | HC | c... 54 2e-08
Medtr5g071540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 3e-08
Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |... 54 4e-08
Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |... 54 4e-08
Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |... 54 4e-08
Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |... 54 4e-08
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 6e-08
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 53 6e-08
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 6e-08
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 6e-08
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 53 7e-08
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 53 7e-08
Medtr5g023060.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 9e-08
Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 9e-08
Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 9e-08
Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 9e-08
Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 9e-08
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 9e-08
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 9e-08
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 9e-08
Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 9e-08
Medtr5g023060.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-07
Medtr5g023060.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-07
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 52 1e-07
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 52 1e-07
Medtr8g107310.1 | eukaryotic translation initiation factor 3 sub... 52 2e-07
Medtr2g069490.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 2e-07
Medtr4g117350.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-07
Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 3e-07
Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 3e-07
Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 3e-07
Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 3e-07
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 3e-07
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 3e-07
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 51 3e-07
Medtr8g442420.1 | peptidyl-prolyl cis-trans isomerase-like prote... 50 4e-07
Medtr6g084140.2 | peptidyl-prolyl cis-trans isomerase-like prote... 50 4e-07
Medtr6g084140.1 | peptidyl-prolyl cis-trans isomerase-like prote... 50 4e-07
Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 5e-07
Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 5e-07
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 50 6e-07
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 6e-07
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 6e-07
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 6e-07
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 50 7e-07
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 7e-07
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 7e-07
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 49 9e-07
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 49 9e-07
Medtr5g070100.1 | RNA recognition motif (RRM) containing protein... 49 1e-06
Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 1e-06
Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 1e-06
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 48 2e-06
Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 48 2e-06
Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 48 2e-06
Medtr7g082150.1 | U1 small nuclear ribonucleoprotein | LC | chr7... 48 2e-06
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 47 3e-06
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c... 47 3e-06
Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 47 3e-06
Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 47 3e-06
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 47 3e-06
Medtr1g080390.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 47 4e-06
Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 47 4e-06
Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 47 5e-06
Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 47 5e-06
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 46 6e-06
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 46 6e-06
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 46 6e-06
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 46 7e-06
Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 46 8e-06
Medtr4g036415.1 | splicing factor-like protein | HC | chr4:13104... 46 8e-06
Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 46 8e-06
Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 46 8e-06
>Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr2:41240036-41242642 | 20130731
Length = 89
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/84 (72%), Positives = 75/84 (89%)
Query: 1 MSQGIGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIE 60
MSQ IGT+LF+SRLSF+T+++QL++LFSPFG +TEATL+ D T+RPKGFGFVSY+SEIE
Sbjct: 1 MSQRIGTKLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIE 60
Query: 61 AEKAIKGMNGRIIQGRLIFVEPAK 84
AEKA K +NGRI+ GRLIFVE AK
Sbjct: 61 AEKARKALNGRIVDGRLIFVEHAK 84
>Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 183
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 56/78 (71%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
TRL++S LSF T++E L+ F FG + + LV+D RP+GF F+ Y +E E++KAI+
Sbjct: 95 TRLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIE 154
Query: 67 GMNGRIIQGRLIFVEPAK 84
GM+G+ + GR+IFVE AK
Sbjct: 155 GMHGKFLDGRVIFVEVAK 172
>Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:40168782-40171275 | 20130731
Length = 141
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 53/77 (68%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
+LFIS LS T+ E+L FSPFG + EA ++ D + R KGF FVSY + EAEKA +G
Sbjct: 36 KLFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEEAEKAREG 95
Query: 68 MNGRIIQGRLIFVEPAK 84
MN + + G +IFV+PAK
Sbjct: 96 MNAKFLDGWVIFVDPAK 112
>Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 134
Score = 75.9 bits (185), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 55/77 (71%)
Query: 5 IGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKA 64
I +++F+ L+F T++E+L FS +G V +A +VL+ KR KGFG+V++ E EA KA
Sbjct: 30 ITSKIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKA 89
Query: 65 IKGMNGRIIQGRLIFVE 81
GMNG+I+ GR+++V+
Sbjct: 90 QIGMNGKILHGRVLYVD 106
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 56/82 (68%)
Query: 3 QGIGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAE 62
+ I +LF+ LSF T+++ L FS +G V EA ++ D +++ KG+GFV++ S+ EAE
Sbjct: 28 RAIAFKLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAE 87
Query: 63 KAIKGMNGRIIQGRLIFVEPAK 84
KAI MN + + GR++FV+ AK
Sbjct: 88 KAITEMNEKALNGRVVFVDYAK 109
>Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
putative | HC | chr1:41816599-41813158 | 20130731
Length = 284
Score = 73.9 bits (180), Expect = 3e-14, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 53/79 (67%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
+LF++ LSF+TS++ L+ F FG + E +++D +KR KG+ F+ Y +E A A+K
Sbjct: 193 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAALKE 252
Query: 68 MNGRIIQGRLIFVEPAKMT 86
MNG+II G +I V+ AK T
Sbjct: 253 MNGKIINGWMIVVDVAKTT 271
>Medtr6g477870.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 169
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 47/66 (71%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
TRL++S LSF T++E L+ F FG + + LV+D RP+GF F+ Y +E E++KAI+
Sbjct: 95 TRLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIE 154
Query: 67 GMNGRI 72
GM+G+I
Sbjct: 155 GMHGKI 160
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
R F+ L++ T E L+ FS +G + ++ ++ D +T R +GFGFV++ E AI+G
Sbjct: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
Query: 68 MNGRIIQGRLIFVEPAK 84
MNG+ + GR I V A+
Sbjct: 69 MNGQDMDGRNITVNEAQ 85
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 65.1 bits (157), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 50/76 (65%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
RLF+ L + T++E+L+ FS FG+V++A LV+D TKR KG ++ + + A +A++
Sbjct: 330 RLFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSAPEFAARALEE 389
Query: 68 MNGRIIQGRLIFVEPA 83
+ I QGRL+ V PA
Sbjct: 390 SDNSIFQGRLLHVMPA 405
Score = 50.4 bits (119), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T+L + ++F +++ L+ LFSPFG + +L L K +GF FV Y ++ EA+ A+
Sbjct: 742 TKLLVKNVAFEATEKDLRQLFSPFGQIK--SLRLPMKFGNHRGFAFVEYVTQQEAQNALT 799
Query: 67 GMNGRIIQGRLIFVEPAK 84
++ + GR + +E AK
Sbjct: 800 ALSSTHLYGRHLVIERAK 817
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
R F+ L++ T + L+ FS FG +T++ ++ D +T R +GFGFV++ E AI+
Sbjct: 9 RCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEE 68
Query: 68 MNGRIIQGRLIFVEPAK 84
MNG+ I GR I V A+
Sbjct: 69 MNGQDIDGRNITVNEAQ 85
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
R F+ L++ T E L+ FS +G + ++ ++ D +T R +GFGFV++ +E AI+
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 68 MNGRIIQGRLIFVEPAK 84
MNG+ + GR I V A+
Sbjct: 67 MNGQDLDGRNITVNQAQ 83
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
R F+ L++ T E L+ FS +G + ++ ++ D +T R +GFGFV++ +E AI+
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 68 MNGRIIQGRLIFVEPAK 84
MNG+ + GR I V A+
Sbjct: 67 MNGQDLDGRNITVNQAQ 83
>Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr3:9308768-9310458 | 20130731
Length = 137
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 47/68 (69%)
Query: 5 IGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKA 64
I +++F+ L+F T++E+L FS +G V +A +VL+ KR KGFG+V++ E EA KA
Sbjct: 30 ITSKIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKA 89
Query: 65 IKGMNGRI 72
GMNG++
Sbjct: 90 QIGMNGKV 97
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 63.5 bits (153), Expect = 4e-11, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 51/83 (61%)
Query: 1 MSQGIGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIE 60
M T+LFI +S+ T + L+ FS +G V +A +++D +T R +GFGF+++ S E
Sbjct: 36 MCSAPTTKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEE 95
Query: 61 AEKAIKGMNGRIIQGRLIFVEPA 83
A AI+ ++G+ + GR + V A
Sbjct: 96 ASSAIQALDGQDLHGRRVRVNYA 118
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 63.2 bits (152), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 50/77 (64%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T+LF+ +S+ T ++ L FS +G V +A +++D ++ R KGFGFV+Y + EA AI+
Sbjct: 44 TKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQ 103
Query: 67 GMNGRIIQGRLIFVEPA 83
++G+ + GR + V A
Sbjct: 104 ALDGQDLYGRRVGVNFA 120
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 63.2 bits (152), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 50/77 (64%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T+LF+ +S+ T ++ L FS +G V +A +++D ++ R KGFGFV+Y + EA AI+
Sbjct: 44 TKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQ 103
Query: 67 GMNGRIIQGRLIFVEPA 83
++G+ + GR + V A
Sbjct: 104 ALDGQDLYGRRVGVNFA 120
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T LF+S LS T+ E L+ F FG V A +V D + KGFGFV Y + +A K I+
Sbjct: 51 TNLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGIE 110
Query: 67 GMNGRIIQGRLIFVEPAK 84
GM+G+ ++G +IF E A+
Sbjct: 111 GMDGKFLEGWVIFAEYAR 128
>Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:24877263-24880115 | 20130731
Length = 340
Score = 60.8 bits (146), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 51/78 (65%)
Query: 6 GTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
G L+++ LS +K +L+ FS G V + LV+DP T+ +GFGFV+ ++ EA++ +
Sbjct: 44 GNNLYVTGLSPRITKRELEKHFSAKGKVVDVHLVVDPWTRESRGFGFVTMDTLEEADRCV 103
Query: 66 KGMNGRIIQGRLIFVEPA 83
K +N +++GR+I VE A
Sbjct: 104 KYLNRSVLEGRVITVEKA 121
>Medtr4g117350.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:48659959-48661848 | 20130731
Length = 162
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T++FI L T++ L +FS FG VT+ L++D KT + GF ++ + E A+ A K
Sbjct: 71 TKIFIKGLPLSTTELHLTKVFSMFGEVTQVKLLIDKKTGQSLGFAYIWFVEEDSAQSAAK 130
Query: 67 GMNGRIIQGRLIFVEPAK 84
MNG++ GR I+V AK
Sbjct: 131 EMNGKLFYGRFIYVTIAK 148
>Medtr7g096260.2 | multiple RNA-binding domain protein | HC |
chr7:38600263-38612243 | 20130731
Length = 723
Score = 59.7 bits (143), Expect = 6e-10, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
RLF+ L + T++E+L+ FS FG+V++ L++ TKR KG F+ + A +A++
Sbjct: 193 RLFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAFIHFSVPEFAARALEE 252
Query: 68 MNGRIIQGRLIFVEPAK 84
N I QGRL+ V PAK
Sbjct: 253 SNNSIFQGRLLRVIPAK 269
Score = 50.8 bits (120), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T+L + ++F +K+ L+ LFSPFG + + L L K +GF FV Y ++ EA+ A+
Sbjct: 600 TKLLVRNVAFEATKKDLRQLFSPFGQIKK--LKLPMKFGNHRGFAFVEYVTQQEAQNALT 657
Query: 67 GMNGRIIQGRLIFVEPAK 84
++ + GR + +E AK
Sbjct: 658 ALSSTHLYGRHLVIERAK 675
>Medtr8g077840.4 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 59.7 bits (143), Expect = 6e-10, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 46/73 (63%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
LF++RLS+ T++ ++K F +GA+ LV D ++ +P+G+ F+ Y + + A K
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 69 NGRIIQGRLIFVE 81
+GR I+GR + V+
Sbjct: 197 DGRKIEGRRVLVD 209
>Medtr8g077840.2 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33135909-33130366 |
20130731
Length = 502
Score = 59.7 bits (143), Expect = 6e-10, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 46/73 (63%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
LF++RLS+ T++ ++K F +GA+ LV D ++ +P+G+ F+ Y + + A K
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 69 NGRIIQGRLIFVE 81
+GR I+GR + V+
Sbjct: 197 DGRKIEGRRVLVD 209
>Medtr8g077840.3 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 59.7 bits (143), Expect = 6e-10, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 46/73 (63%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
LF++RLS+ T++ ++K F +GA+ LV D ++ +P+G+ F+ Y + + A K
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 69 NGRIIQGRLIFVE 81
+GR I+GR + V+
Sbjct: 197 DGRKIEGRRVLVD 209
>Medtr8g077840.1 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 59.7 bits (143), Expect = 6e-10, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 46/73 (63%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
LF++RLS+ T++ ++K F +GA+ LV D ++ +P+G+ F+ Y + + A K
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 69 NGRIIQGRLIFVE 81
+GR I+GR + V+
Sbjct: 197 DGRKIEGRRVLVD 209
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
++LFI LS+ + L+ F+ +G V EA ++ D +T R +GFGFV++ SE A A+
Sbjct: 36 SKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALS 95
Query: 67 GMNGRIIQGRLIFVEPAK 84
M+G+ + GR I V A
Sbjct: 96 -MDGQDLNGRNIRVSYAN 112
>Medtr7g096260.1 | multiple RNA-binding domain protein | HC |
chr7:38601352-38612085 | 20130731
Length = 709
Score = 59.7 bits (143), Expect = 6e-10, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
RLF+ L + T++E+L+ FS FG+V++ L++ TKR KG F+ + A +A++
Sbjct: 179 RLFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAFIHFSVPEFAARALEE 238
Query: 68 MNGRIIQGRLIFVEPAK 84
N I QGRL+ V PAK
Sbjct: 239 SNNSIFQGRLLRVIPAK 255
Score = 50.8 bits (120), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T+L + ++F +K+ L+ LFSPFG + + L L K +GF FV Y ++ EA+ A+
Sbjct: 586 TKLLVRNVAFEATKKDLRQLFSPFGQIKK--LKLPMKFGNHRGFAFVEYVTQQEAQNALT 643
Query: 67 GMNGRIIQGRLIFVEPAK 84
++ + GR + +E AK
Sbjct: 644 ALSSTHLYGRHLVIERAK 661
>Medtr7g094670.1 | mRNA capping enzyme, putative | LC |
chr7:37775862-37750453 | 20130731
Length = 1678
Score = 59.3 bits (142), Expect = 9e-10, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
RLF+ L + T++E+L+ FS FG+V++ LV+D TKR KG F+ + A +A++
Sbjct: 900 RLFVRNLPYSTTEEELEEHFSQFGSVSQVHLVVDKDTKRSKGRAFIHFSVPEFAARALEE 959
Query: 68 MNGRIIQGRLIFV 80
+ I QGRL+ V
Sbjct: 960 SDNSIFQGRLLHV 972
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
+LFI +S+ T + L+ FS +G V +A +++D T R +GFGF+++ + EA A++
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 68 MNGRIIQGRLIFVEPA 83
M+ + + GR + V A
Sbjct: 101 MDNKELDGRTVRVNYA 116
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
+LFI +S+ T + L+ FS +G V +A +++D T R +GFGF+++ + EA A++
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 68 MNGRIIQGRLIFVEPA 83
M+ + + GR + V A
Sbjct: 101 MDNKELDGRTVRVNYA 116
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T+LFI+ LS+ T++ L+ F G + E ++ + +T KG+GFV + SE A A K
Sbjct: 33 TKLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAATARK 92
Query: 67 GMNGRIIQGRLIFVEPAK 84
++G+I+ GR I V A
Sbjct: 93 ELHGQIVDGRRIRVGYAH 110
>Medtr8g074790.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:31620260-31623626 | 20130731
Length = 270
Score = 58.2 bits (139), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 6 GTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
G L+++ LS + L+ FS G V LV++P+T+ +GF FV+ +S +AE+ I
Sbjct: 61 GNTLYVTGLSSRVTDRDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSHEDAERCI 120
Query: 66 KGMNGRIIQGRLIFVEPAK 84
K +N +++GR I VE ++
Sbjct: 121 KHLNQSVLEGRYITVERSR 139
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 6 GTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
G L++ L + E+LK +FS FG +T ++ D KGFGFV++ + EA KAI
Sbjct: 208 GANLYLKNLDESINDEKLKEMFSEFGTITSCKVMFDAHG-HSKGFGFVAFSTSEEASKAI 266
Query: 66 KGMNGRIIQGRLIFV 80
GM+G+II + ++V
Sbjct: 267 NGMSGKIIGQKPLYV 281
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
+LF+ LS+ ++ LK FS FG VTE +V D + R +GFGFV + +E A+ A
Sbjct: 36 NKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKD 95
Query: 67 GMNGRIIQGR 76
M+G+ + GR
Sbjct: 96 AMDGKALLGR 105
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 57.4 bits (137), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 6 GTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
G L++ L + E+L LFS FG VT ++ DP+ +G GFV++ + EA +A+
Sbjct: 305 GANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGIS-RGSGFVAFSTPEEATRAL 363
Query: 66 KGMNGRIIQGRLIFVEPAK 84
MNG+++ G+ ++V PA+
Sbjct: 364 AEMNGKMVAGKPLYVAPAQ 382
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 57.4 bits (137), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 48/75 (64%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
L ++ +S+ T + L+ FS +G V +A +++D +T R +GFGF+++ S EA AI+ +
Sbjct: 52 LSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQAL 111
Query: 69 NGRIIQGRLIFVEPA 83
+G+ + GR + V A
Sbjct: 112 DGQDLHGRRVRVNYA 126
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
R++++ L++ +L+ +FS G + A +V D +T R +GFGFV+ E E AI
Sbjct: 207 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAA 266
Query: 68 MNGRIIQGRLIFVEPAK 84
++G+ ++GR I V A+
Sbjct: 267 LDGQSLEGRTIRVSVAE 283
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
+LF+ F E+L LF G V A ++ + +T +GFGFV+ + EAE A++
Sbjct: 110 KLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEK 169
Query: 68 MNGRIIQGRLIFVEPA 83
NG GR + V A
Sbjct: 170 FNGYDYNGRSLVVNKA 185
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 6 GTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
G L++ + ++E+LK LFS FG +T ++ D + R KG GFV++ + EA KAI
Sbjct: 303 GANLYLKNIDKSLNEEKLKELFSEFGTITSCKVMSDARG-RSKGVGFVAFTTPEEASKAI 361
Query: 66 KGMNGRIIQGRLIFVEPAK 84
MNG+II + ++V A+
Sbjct: 362 DEMNGKIIGQKPVYVSVAQ 380
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 6 GTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
G R ++ L + L+ LFS G V A +V D +T R +GFGFV+ +E E AI
Sbjct: 215 GLRAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAI 274
Query: 66 KGMNGRIIQGRLIFVEPAK 84
++G+ GR I V A+
Sbjct: 275 AALDGQSFNGRAIRVNVAE 293
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
++F+ L F E+L LF G V A ++ + T R +GFGFV+ + E E+A+
Sbjct: 123 KIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNK 182
Query: 68 MNGRIIQGRLIFVEPA 83
+G + GRL+ V A
Sbjct: 183 FSGFELDGRLLTVNKA 198
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 4 GIGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEK 63
+ +L++ L F ++ QL+ +F PFG V L LD +T KGFGF+ + + IE K
Sbjct: 314 AVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQF-AHIEHAK 372
Query: 64 AIKGMNGRI-IQGRLIFV 80
A + +NG++ I GR I V
Sbjct: 373 AAQSLNGKLEIAGRTIKV 390
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 4 GIGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEK 63
+ +L++ L F ++ QL+ +F PFG V L LD +T KGFGF+ + + IE K
Sbjct: 314 AVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQF-AHIEHAK 372
Query: 64 AIKGMNGRI-IQGRLIFV 80
A + +NG++ I GR I V
Sbjct: 373 AAQSLNGKLEIAGRTIKV 390
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 4 GIGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEK 63
+ +L++ L F ++ QL+ +F PFG V L LD +T KGFGF+ + + IE K
Sbjct: 314 AVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQF-AHIEHAK 372
Query: 64 AIKGMNGRI-IQGRLIFV 80
A + +NG++ I GR I V
Sbjct: 373 AAQSLNGKLEIAGRTIKV 390
>Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:31623161-31620622 | 20130731
Length = 185
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 47/76 (61%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
+F++ L+ T+ E L+ F FG V + +V D + KGFG+V Y + +A K I+GM
Sbjct: 46 VFVTGLNKRTTSETLREAFKKFGEVKQVRVVADRVSGYSKGFGYVRYATSEDAAKGIQGM 105
Query: 69 NGRIIQGRLIFVEPAK 84
+G+ ++G ++F E A+
Sbjct: 106 DGKFLEGWIVFAEYAR 121
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 47/78 (60%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
+L++ +S+ T L+ F+ +G V +A +++D + R KGFGFV++ + EA A++
Sbjct: 40 AKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAALQ 99
Query: 67 GMNGRIIQGRLIFVEPAK 84
M+ + + GR + V A+
Sbjct: 100 AMDNQELHGRTVRVNYAQ 117
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
++LFI LS+ + L+ F+ +G V EA ++ D +T R +GFGFV++ SE A A+
Sbjct: 36 SKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALS 95
Query: 67 GMNGRII 73
M+G+++
Sbjct: 96 -MDGQVV 101
>Medtr2g090655.1 | nuclear cap-binding protein subunit 2 | HC |
chr2:38808070-38813158 | 20130731
Length = 259
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T +++ +SF+T++EQ+ LF+ G + + + LD TK P GF FV Y S + E A K
Sbjct: 34 TTVYVGNMSFYTTEEQIYELFTRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDACK 93
Query: 67 GMNGRIIQGRLIFVE 81
++G I+ R I V+
Sbjct: 94 YISGTILDDRPIRVD 108
>Medtr5g071540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:30368066-30365046 | 20130731
Length = 149
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 5 IGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKA 64
+ +++ + L +FT + L+ FS FG + E +V D T+R KG F+ Y + +A A
Sbjct: 37 LASKILVKNLPYFTGENALQKKFSNFGKIAEVQMVKDVSTERSKGLAFIQYTCQDDAMLA 96
Query: 65 IKGMNGRIIQGRLIFVEPAKM 85
++ M+ + GR I VE K+
Sbjct: 97 LETMDQQSFYGRTISVELEKL 117
>Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 53.5 bits (127), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 48/76 (63%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
+F+ L +++ L+ +FS G VTE L+++P+TK+ KGF F+ +E+ +A++A+ +
Sbjct: 216 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 275
Query: 69 NGRIIQGRLIFVEPAK 84
+I G+ V P++
Sbjct: 276 KNPVINGKQCGVTPSQ 291
>Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 53.5 bits (127), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 48/76 (63%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
+F+ L +++ L+ +FS G VTE L+++P+TK+ KGF F+ +E+ +A++A+ +
Sbjct: 216 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 275
Query: 69 NGRIIQGRLIFVEPAK 84
+I G+ V P++
Sbjct: 276 KNPVINGKQCGVTPSQ 291
>Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 53.5 bits (127), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 48/76 (63%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
+F+ L +++ L+ +FS G VTE L+++P+TK+ KGF F+ +E+ +A++A+ +
Sbjct: 217 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 276
Query: 69 NGRIIQGRLIFVEPAK 84
+I G+ V P++
Sbjct: 277 KNPVINGKQCGVTPSQ 292
>Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 53.5 bits (127), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 48/76 (63%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
+F+ L +++ L+ +FS G VTE L+++P+TK+ KGF F+ +E+ +A++A+ +
Sbjct: 217 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 276
Query: 69 NGRIIQGRLIFVEPAK 84
+I G+ V P++
Sbjct: 277 KNPVINGKQCGVTPSQ 292
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 53.1 bits (126), Expect = 6e-08, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 2 SQGIGTRLFISRLSFFTSKEQLKTLFSPFGA-VTEATLVLDPKTKRPKGFGFVSYESEIE 60
S +G LFI L ++ L FS FG VT ++ DP T +GFGF+SY+S
Sbjct: 107 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEA 166
Query: 61 AEKAIKGMNGRIIQGRLIFVEPA 83
++ AI+ MNG+ + R I V A
Sbjct: 167 SDSAIEAMNGQYLCNRQITVSYA 189
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 4 GIGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEK 63
+ +L++ L F ++ L+ +F PFG + L LD +T KGFGFV + + +E K
Sbjct: 300 AVDRKLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQF-AHLEHAK 358
Query: 64 AIKGMNGRI-IQGRLIFV 80
A + +NG++ I GR I V
Sbjct: 359 AAQSLNGKLEIAGRTIKV 376
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 53.1 bits (126), Expect = 6e-08, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
R+ + L++ L++LF G V EA ++ D ++ R +GFGFV++ S E + AI+
Sbjct: 197 RVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRT 256
Query: 68 MNGRIIQGRLIFVEPA 83
++G + GR I V PA
Sbjct: 257 LDGADLNGRAIRVSPA 272
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 53.1 bits (126), Expect = 6e-08, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
R+ + L++ L++LF G V EA ++ D ++ R +GFGFV++ S E + AI+
Sbjct: 197 RVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRT 256
Query: 68 MNGRIIQGRLIFVEPA 83
++G + GR I V PA
Sbjct: 257 LDGADLNGRAIRVSPA 272
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 52.8 bits (125), Expect = 7e-08, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 6 GTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
G L++ L ++E+LK LFS FG VT ++LD KG GFV++ + EA KA+
Sbjct: 312 GANLYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLDSH-GHSKGSGFVAFSTPEEANKAL 370
Query: 66 KGMNGRIIQGRLIFVEPAK 84
MNG+++ + +FV A+
Sbjct: 371 NEMNGKLVGRKPLFVAVAQ 389
Score = 50.1 bits (118), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T +++ +S ++ E LK LF PFG +T AT++ D K + FGFV+++S A A++
Sbjct: 209 TNVYVKNISEASTDEDLKQLFGPFGMITSATVMKDANGKS-RCFGFVNFQSPDSAAAAVE 267
Query: 67 GMNGRIIQ-GRLIFVEPAK 84
+NG I +++FV A+
Sbjct: 268 KLNGTAINDDKVLFVGRAQ 286
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 52.8 bits (125), Expect = 7e-08, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 6 GTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
G L++ L ++E+LK LFS FG VT ++LD KG GFV++ + EA KA+
Sbjct: 312 GANLYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLDSH-GHSKGSGFVAFSTPEEANKAL 370
Query: 66 KGMNGRIIQGRLIFVEPAK 84
MNG+++ + +FV A+
Sbjct: 371 NEMNGKLVGRKPLFVAVAQ 389
Score = 50.1 bits (118), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T +++ +S ++ E LK LF PFG +T AT++ D K + FGFV+++S A A++
Sbjct: 209 TNVYVKNISEASTDEDLKQLFGPFGMITSATVMKDANGKS-RCFGFVNFQSPDSAAAAVE 267
Query: 67 GMNGRIIQ-GRLIFVEPAK 84
+NG I +++FV A+
Sbjct: 268 KLNGTAINDDKVLFVGRAQ 286
>Medtr5g023060.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:9164769-9166628 | 20130731
Length = 236
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%)
Query: 6 GTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
G L+++ LS ++ L+ FS G V LV++P+T+ +GF FV+ ++ +A + I
Sbjct: 130 GDTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRCI 189
Query: 66 KGMNGRIIQGRLIFVE 81
K +N I++GR I VE
Sbjct: 190 KYLNQSILEGRYITVE 205
>Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 52.4 bits (124), Expect = 9e-08, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
L + ++F T+ + L LF +G V + + D +T +GF FV Y+ EA KA+ +
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 69 NGRIIQGRLIFVEPAK 84
+GR++ GR I V+ AK
Sbjct: 78 DGRMVDGREITVQFAK 93
>Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 52.4 bits (124), Expect = 9e-08, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
L + ++F T+ + L LF +G V + + D +T +GF FV Y+ EA KA+ +
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 69 NGRIIQGRLIFVEPAK 84
+GR++ GR I V+ AK
Sbjct: 78 DGRMVDGREITVQFAK 93
>Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 52.4 bits (124), Expect = 9e-08, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
L + ++F T+ + L LF +G V + + D +T +GF FV Y+ EA KA+ +
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 69 NGRIIQGRLIFVEPAK 84
+GR++ GR I V+ AK
Sbjct: 78 DGRMVDGREITVQFAK 93
>Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 52.4 bits (124), Expect = 9e-08, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
L + ++F T+ + L LF +G V + + D +T +GF FV Y+ EA KA+ +
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 69 NGRIIQGRLIFVEPAK 84
+GR++ GR I V+ AK
Sbjct: 78 DGRMVDGREITVQFAK 93
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 52.4 bits (124), Expect = 9e-08, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
++F+ L+ ++ K F FG +T+ ++ D T+RP+GFGF++Y+SE EK +
Sbjct: 107 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHK 166
Query: 68 ----MNGRIIQ 74
+NG++++
Sbjct: 167 TFHELNGKMVE 177
Score = 49.7 bits (117), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
+LFI +S+ T++++L+ F FG V EA ++ D T R +GFGFV + AE+ +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
Query: 68 MNGRIIQGRLIFVEPA 83
M +I GR + + A
Sbjct: 63 MEKHVIDGRTVEAKKA 78
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 52.4 bits (124), Expect = 9e-08, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
++F+ L+ ++ K F FG +T+ ++ D T+RP+GFGF++Y+SE EK +
Sbjct: 107 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHK 166
Query: 68 ----MNGRIIQ 74
+NG++++
Sbjct: 167 TFHELNGKMVE 177
Score = 49.7 bits (117), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
+LFI +S+ T++++L+ F FG V EA ++ D T R +GFGFV + AE+ +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
Query: 68 MNGRIIQGRLIFVEPA 83
M +I GR + + A
Sbjct: 63 MEKHVIDGRTVEAKKA 78
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 52.4 bits (124), Expect = 9e-08, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
++F+ L+ ++ K F FG +T+ ++ D T+RP+GFGF++Y+SE EK +
Sbjct: 107 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHK 166
Query: 68 ----MNGRIIQ 74
+NG++++
Sbjct: 167 TFHELNGKMVE 177
Score = 49.7 bits (117), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
+LFI +S+ T++++L+ F FG V EA ++ D T R +GFGFV + AE+ +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
Query: 68 MNGRIIQGRLIFVEPA 83
M +I GR + + A
Sbjct: 63 MEKHVIDGRTVEAKKA 78
>Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9464335-9461370 | 20130731
Length = 411
Score = 52.4 bits (124), Expect = 9e-08, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
++F+ L+ ++ K F FG +T+ ++ D T+RP+GFGF++Y+SE EK +
Sbjct: 37 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHK 96
Query: 68 ----MNGRIIQ 74
+NG++++
Sbjct: 97 TFHELNGKMVE 107
>Medtr5g023060.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:9164769-9167836 | 20130731
Length = 303
Score = 52.4 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 6 GTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
G L+++ LS ++ L+ FS G V LV++P+T+ +GF FV+ ++ +A + I
Sbjct: 130 GDTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRCI 189
Query: 66 KGMNGRIIQGRLIFVEPAK 84
K +N I++GR I VE +K
Sbjct: 190 KYLNQSILEGRYITVERSK 208
>Medtr5g023060.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:9164769-9166628 | 20130731
Length = 213
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%)
Query: 6 GTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
G L+++ LS ++ L+ FS G V LV++P+T+ +GF FV+ ++ +A + I
Sbjct: 130 GDTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRCI 189
Query: 66 KGMNGRIIQGRLIFVE 81
K +N I++GR I VE
Sbjct: 190 KYLNQSILEGRYITVE 205
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 52.0 bits (123), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
+LFI +S+ T +E+LK F+ +G V EA ++ D T R +GFGFV + AE+ I
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI-- 64
Query: 68 MNGRIIQGRLIFVEPA 83
++ II GR + + A
Sbjct: 65 IDKHIIDGRTVEAKKA 80
Score = 48.9 bits (115), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 4 GIGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAE- 62
G ++F+ L ++ K F FG +T+ ++ D T+RP+GFGF++Y+SE +
Sbjct: 103 GRTKKIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDR 162
Query: 63 ---KAIKGMNGRIIQ 74
K +NG++++
Sbjct: 163 VLYKTFHELNGKMVE 177
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 52.0 bits (123), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
+LFI +S+ T +E+LK F+ +G V EA ++ D T R +GFGFV + AE+ I
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI-- 64
Query: 68 MNGRIIQGRLIFVEPA 83
++ II GR + + A
Sbjct: 65 IDKHIIDGRTVEAKKA 80
Score = 48.9 bits (115), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 4 GIGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAE- 62
G ++F+ L ++ K F FG +T+ ++ D T+RP+GFGF++Y+SE +
Sbjct: 103 GRTKKIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDR 162
Query: 63 ---KAIKGMNGRIIQ 74
K +NG++++
Sbjct: 163 VLYKTFHELNGKMVE 177
>Medtr8g107310.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:45339610-45341085 | 20130731
Length = 292
Score = 51.6 bits (122), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 11 ISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGMNG 70
++ LS T + L LF PFGAV+ + +D KT +GFGFV++ S +A++AI +NG
Sbjct: 215 VTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVSREDAQRAINKLNG 274
>Medtr2g069490.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr2:28910323-28904195 | 20130731
Length = 415
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 42/70 (60%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
L + +LS ++ LK +FS FG V LV+D PKG+G+V +++ EAEKA+ M
Sbjct: 102 LHVEKLSRNVNEGHLKEIFSNFGEVVSVELVMDRAVNLPKGYGYVHFKTRGEAEKALLYM 161
Query: 69 NGRIIQGRLI 78
+G I G ++
Sbjct: 162 DGAQIDGNVV 171
>Medtr4g117350.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:48659959-48661573 | 20130731
Length = 139
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T++FI L T++ L +FS FG VT+ L++D KT + GF ++ + E A+ A K
Sbjct: 71 TKIFIKGLPLSTTELHLTKVFSMFGEVTQVKLLIDKKTGQSLGFAYIWFVEEDSAQSAAK 130
Query: 67 GMNGRII 73
MNG++
Sbjct: 131 EMNGKVC 137
>Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:37499515-37504601 | 20130731
Length = 280
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
L + ++F T+ + L LF +G V + + D +T +GF FV Y+ EA KA+ +
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 69 NGRIIQGRLIFVEPAK 84
+GR++ GR I V+ AK
Sbjct: 78 DGRMVDGREITVQFAK 93
>Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:37499504-37504601 | 20130731
Length = 280
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
L + ++F T+ + L LF +G V + + D +T +GF FV Y+ EA KA+ +
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 69 NGRIIQGRLIFVEPAK 84
+GR++ GR I V+ AK
Sbjct: 78 DGRMVDGREITVQFAK 93
>Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:37499531-37504526 | 20130731
Length = 281
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
L + ++F T+ + L LF +G V + + D +T +GF FV Y+ EA KA+ +
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 69 NGRIIQGRLIFVEPAK 84
+GR++ GR I V+ AK
Sbjct: 78 DGRMVDGREITVQFAK 93
>Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:37499531-37504601 | 20130731
Length = 281
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
L + ++F T+ + L LF +G V + + D +T +GF FV Y+ EA KA+ +
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 69 NGRIIQGRLIFVEPAK 84
+GR++ GR I V+ AK
Sbjct: 78 DGRMVDGREITVQFAK 93
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
RLF+ L F S QL LF G V ++ D T R +GF FV+ + +AE+AI+
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRM 168
Query: 68 MNGRIIQGRLIFVE 81
+G + GR I V
Sbjct: 169 FDGTTVGGRAIKVN 182
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
RLF+ L F S QL LF G V ++ D T R +GF FV+ + +AE+AI+
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRM 168
Query: 68 MNGRIIQGRLIFVE 81
+G + GR I V
Sbjct: 169 FDGTTVGGRAIKVN 182
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
R++++ L++ +L+ +FS G + A +V D +T R +GFGFV+ E E AI
Sbjct: 207 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAA 266
Query: 68 MNGRI 72
++G++
Sbjct: 267 LDGQV 271
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
+LF+ F E+L LF G V A ++ + +T +GFGFV+ + EAE A++
Sbjct: 110 KLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEK 169
Query: 68 MNGRIIQGRLIFVEPA 83
NG GR + V A
Sbjct: 170 FNGYDYNGRSLVVNKA 185
>Medtr8g442420.1 | peptidyl-prolyl cis-trans isomerase-like protein
| HC | chr8:16036627-16029239 | 20130731
Length = 605
Score = 50.4 bits (119), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
LF+ +L+ T E L T+FS FG V+ A ++ D KT + F+ +E ++ E+A M
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFEDKLACEQAYFKM 304
Query: 69 NGRIIQGRLIFVE 81
+ +I R I V+
Sbjct: 305 DNALIDDRRIHVD 317
>Medtr6g084140.2 | peptidyl-prolyl cis-trans isomerase-like protein
| HC | chr6:31429321-31436291 | 20130731
Length = 604
Score = 50.4 bits (119), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
LF+ +L+ T E L T+FS FG V+ A ++ D KT + F+ +E ++ E+A M
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFEDKLACEQAYFKM 304
Query: 69 NGRIIQGRLIFVE 81
+ +I R I V+
Sbjct: 305 DNALIDDRRIHVD 317
>Medtr6g084140.1 | peptidyl-prolyl cis-trans isomerase-like protein
| HC | chr6:31429739-31435838 | 20130731
Length = 621
Score = 50.4 bits (119), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
LF+ +L+ T E L T+FS FG V+ A ++ D KT + F+ +E ++ E+A M
Sbjct: 262 LFVCKLNPVTEDEDLHTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFEDKLACEQAYFKM 321
Query: 69 NGRIIQGRLIFVE 81
+ +I R I V+
Sbjct: 322 DNALIDDRRIHVD 334
>Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 5 IGTRLFISRLSFFTSKEQLKTLF-SPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEK 63
I LF++ + + +K F S G V A ++ +RP G+GFVSY+S+ EA++
Sbjct: 180 ITYNLFVANFPYEARSKDVKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADE 239
Query: 64 AIKGMNGRIIQGRLIFVEPAK 84
A+ G+ GR + V P+K
Sbjct: 240 ALAEFQGKNFMGRPLRVAPSK 260
>Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 5 IGTRLFISRLSFFTSKEQLKTLF-SPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEK 63
I LF++ + + +K F S G V A ++ +RP G+GFVSY+S+ EA++
Sbjct: 180 ITYNLFVANFPYEARSKDVKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADE 239
Query: 64 AIKGMNGRIIQGRLIFVEPAK 84
A+ G+ GR + V P+K
Sbjct: 240 ALAEFQGKNFMGRPLRVAPSK 260
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 49.7 bits (117), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 6 GTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
G L++ L + E+LK +FS FG +T ++ DP +G GFV++ + EA +A+
Sbjct: 314 GLNLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPNGVS-RGSGFVAFSTPEEASRAL 372
Query: 66 KGMNGRIIQGRLIFVEPAK 84
MNG++I + ++V A+
Sbjct: 373 GEMNGKMIVSKPLYVAVAQ 391
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 49.7 bits (117), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 40/76 (52%)
Query: 6 GTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
G LFI + ++L F PFG V A + +D T K FGFVSY+S A+ AI
Sbjct: 348 GANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 407
Query: 66 KGMNGRIIQGRLIFVE 81
MNG + G+ + V+
Sbjct: 408 SMMNGCQLGGKKLKVQ 423
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 49.7 bits (117), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 40/76 (52%)
Query: 6 GTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
G LFI + ++L F PFG V A + +D T K FGFVSY+S A+ AI
Sbjct: 347 GANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 406
Query: 66 KGMNGRIIQGRLIFVE 81
MNG + G+ + V+
Sbjct: 407 SMMNGCQLGGKKLKVQ 422
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 49.7 bits (117), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAE----K 63
++F+ L+ ++ K F FG +T+ ++ D T+RP+GFGF++Y+SE + K
Sbjct: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLK 166
Query: 64 AIKGMNGRIIQ 74
+NG++++
Sbjct: 167 TFHELNGKMVE 177
Score = 47.0 bits (110), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK- 66
+LFI +S+ T++E+L+ FS +G V EA ++ D T R +GFGFV + A+ ++
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQE 66
Query: 67 --GMNGRIIQGR 76
++GR+++ +
Sbjct: 67 KHNIDGRMVEAK 78
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 49.7 bits (117), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
+F+ LS T+ ++LK F FG +T A ++ D K K FGFV++ES +A +A++ +
Sbjct: 215 VFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGDGKS-KCFGFVNFESTDDAARAVEAL 273
Query: 69 NGRIIQGRLIFVEPAK 84
NG+ I + +V A+
Sbjct: 274 NGKKIDDKEWYVGKAQ 289
Score = 49.3 bits (116), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 6 GTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
G L++ L + E+LK LFS +G +T ++ DP +G GFV++ + EA +A+
Sbjct: 315 GANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGVS-RGSGFVAFSTPEEASRAL 373
Query: 66 KGMNGRIIQGRLIFVEPAK 84
MNG+++ + ++V A+
Sbjct: 374 LEMNGKMVASKPLYVTLAQ 392
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
+LF+ L++ + E L F G V A ++ D +T + +G+GFVSY ++ E + A+
Sbjct: 205 KLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAI 264
Query: 68 MNGRIIQGRLIFVEPAK 84
M+ ++GR + V A+
Sbjct: 265 MDNVELEGRTLRVSLAQ 281
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 49.3 bits (116), Expect = 7e-07, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAE----K 63
++F+ L+ ++ K F FG +T+ ++ D T+RP+GFGF++Y+SE + K
Sbjct: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLK 166
Query: 64 AIKGMNGRIIQ 74
+NG++++
Sbjct: 167 TFHELNGKMVE 177
Score = 47.0 bits (110), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK- 66
+LFI +S+ T++E+L+ FS +G V EA ++ D T R +GFGFV + A+ ++
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQE 66
Query: 67 --GMNGRIIQGR 76
++GR+++ +
Sbjct: 67 KHNIDGRMVEAK 78
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 49.3 bits (116), Expect = 9e-07, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
+F+ LS + L FS + + ++A ++ D KT R +GFGFVS+ ++ EA+ AI +
Sbjct: 133 IFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDL 192
Query: 69 NGRIIQGRLI 78
G+ + R I
Sbjct: 193 TGKWLGSRQI 202
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
RL++ L F + QL +F+ G V +V D T R +GF FV+ +S EA++AI+
Sbjct: 110 RLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIRM 169
Query: 68 MNGRIIQGR 76
+G + GR
Sbjct: 170 FDGSQVGGR 178
>Medtr5g070100.1 | RNA recognition motif (RRM) containing protein |
HC | chr5:29707444-29702897 | 20130731
Length = 393
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 41/73 (56%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
+F+ + F ++ + +F+ +G V + LV D T + KGF F++YE + A+ +
Sbjct: 38 VFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGKSKGFAFIAYEDQRSTNLAVDNL 97
Query: 69 NGRIIQGRLIFVE 81
NG + GR+I V+
Sbjct: 98 NGAQVSGRIIRVD 110
>Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr8:9035953-9039164 | 20130731
Length = 282
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T+LF+ L++ T +E ++ F FG + EA ++ D T R KG+GFV+++ + E AI+
Sbjct: 25 TKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFK---DPEAAIR 81
Query: 67 GMN--GRIIQGR 76
+I GR
Sbjct: 82 ACQNPSPVIDGR 93
>Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr8:9035953-9039164 | 20130731
Length = 280
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T+LF+ L++ T +E ++ F FG + EA ++ D T R KG+GFV+++ + E AI+
Sbjct: 25 TKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFK---DPEAAIR 81
Query: 67 GMN--GRIIQGR 76
+I GR
Sbjct: 82 ACQNPSPVIDGR 93
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 48.1 bits (113), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
+F+ LS + L FS + + ++A ++ D KT R +GFGFVS+ S+ +A+ AI +
Sbjct: 149 IFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 208
Query: 69 NGRIIQGRLI 78
G+ + R I
Sbjct: 209 TGKWLGSRQI 218
>Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:12141158-12149871 | 20130731
Length = 267
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKA 64
T++F+ L++ T KE +K F FG + EA ++ D T R KG+GFV++ A +A
Sbjct: 16 TKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRA 73
>Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:12141158-12149871 | 20130731
Length = 272
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKA 64
T++F+ L++ T KE +K F FG + EA ++ D T R KG+GFV++ A +A
Sbjct: 16 TKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRA 73
>Medtr7g082150.1 | U1 small nuclear ribonucleoprotein | LC |
chr7:31471924-31467830 | 20130731
Length = 566
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKA 64
LF+ RLS T++E L+ + S FG V LV D T +G+ FV +E+E E +A
Sbjct: 65 LFVGRLSRLTTEETLRKVMSEFGQVKNLRLVRDIVTGASRGYAFVEFETEREMRRA 120
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 47.4 bits (111), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAE----K 63
++F+ L S E+ K F FG +T+ ++ D T RP+GFGF++++SE + +
Sbjct: 118 KIFVGGLPANMSVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSVQSVMMR 177
Query: 64 AIKGMNGRIIQ 74
+ +NGR ++
Sbjct: 178 SFHDLNGRQVE 188
>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
chr1:43879642-43873268 | 20130731
Length = 572
Score = 47.4 bits (111), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
+F+ + + ++EQLK + G V LV D +T +PKG+GF Y E A A + +
Sbjct: 31 VFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEETALSARRNL 90
Query: 69 NGRIIQGRLIFVEPAK 84
G I GR + V+ A+
Sbjct: 91 QGYEINGRQLRVDFAE 106
>Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr7:48649613-48651189 | 20130731
Length = 256
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T++F+ L++ T K+ L+ F +G + EA ++ D T R KG+GFV+++ A+KA +
Sbjct: 18 TKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACE 77
Query: 67 G----MNGR 71
+NGR
Sbjct: 78 EPTVIINGR 86
>Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr7:48649576-48651271 | 20130731
Length = 253
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T++F+ L++ T K+ L+ F +G + EA ++ D T R KG+GFV+++ A+KA +
Sbjct: 18 TKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACE 77
Query: 67 G----MNGR 71
+NGR
Sbjct: 78 EPTVIINGR 86
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
+LF+ LS T+ E L+T+FS +G + EA ++ D T R KG+GFV Y A A+K
Sbjct: 77 KLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVYRHVDGAVLALKE 136
Query: 68 MNGRIIQGRLIFVE 81
+ + I GR+ +
Sbjct: 137 PS-KKIDGRMTVTQ 149
>Medtr1g080390.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:35718041-35708690 | 20130731
Length = 962
Score = 47.0 bits (110), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 40/77 (51%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
+FI+ L F E+LK FS FG V VL TKRP+G GF+ +++ A+ AI
Sbjct: 500 VFITNLPFELDTEELKQRFSAFGEVEYFAPVLHQVTKRPRGTGFLKFKTAEAADNAISTA 559
Query: 69 NGRIIQGRLIFVEPAKM 85
N G L+ P K+
Sbjct: 560 NTASGMGILVKGRPLKV 576
>Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:26612934-26618708 | 20130731
Length = 283
Score = 47.0 bits (110), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T++F+ L++ T ++++T F FG + EA ++ D T + KG+GFV++ A +A
Sbjct: 16 TKVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACA 75
Query: 67 GMNGRIIQGR 76
N +I GR
Sbjct: 76 DPN-PVIDGR 84
>Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T++F+ L++ T ++ LK F FG + EA ++ D T + KG+GFV+++ A A +
Sbjct: 26 TKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQ 85
Query: 67 GMN----GRIIQGRLIFVEP 82
N GR L + +P
Sbjct: 86 NPNPMIDGRRANCNLAYQKP 105
>Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T++F+ L++ T ++ LK F FG + EA ++ D T + KG+GFV+++ A A +
Sbjct: 26 TKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQ 85
Query: 67 GMN----GRIIQGRLIFVEP 82
N GR L + +P
Sbjct: 86 NPNPMIDGRRANCNLAYQKP 105
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 46.2 bits (108), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 42/73 (57%)
Query: 6 GTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
G+ +FI L TS + ++ L P G + E L+ D +T KG+ FV Y+++ A+KAI
Sbjct: 103 GSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAI 162
Query: 66 KGMNGRIIQGRLI 78
++ + +G+ +
Sbjct: 163 DDIHNKEFKGKTL 175
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 46.2 bits (108), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 42/73 (57%)
Query: 6 GTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
G+ +FI L TS + ++ L P G + E L+ D +T KG+ FV Y+++ A+KAI
Sbjct: 103 GSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAI 162
Query: 66 KGMNGRIIQGRLI 78
++ + +G+ +
Sbjct: 163 DDIHNKEFKGKTL 175
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 46.2 bits (108), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 42/73 (57%)
Query: 6 GTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
G+ +FI L TS + ++ L P G + E L+ D +T KG+ FV Y+++ A+KAI
Sbjct: 103 GSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAI 162
Query: 66 KGMNGRIIQGRLI 78
++ + +G+ +
Sbjct: 163 DDIHNKEFKGKTL 175
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 46.2 bits (108), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
+LFI L + T+ E L++LFS +G + EA +++D T + KG+GFV++ A A++
Sbjct: 74 KLFIRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFLHVDGALLALRE 133
Query: 68 MNGRIIQGRLIFVEPA 83
+ R I GR+ + A
Sbjct: 134 PSKR-IDGRVTVTQLA 148
>Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251226-42253109 | 20130731
Length = 251
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T++F+ L++ T ++ LK F FG + EA ++ D T + KG+GFV+++ A A +
Sbjct: 26 TKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQ 85
Query: 67 GMN----GRIIQGRLIFVEP 82
N GR L + +P
Sbjct: 86 NPNPMIDGRRANCNLAYQKP 105
>Medtr4g036415.1 | splicing factor-like protein | HC |
chr4:13104578-13109685 | 20130731
Length = 767
Score = 46.2 bits (108), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 37/77 (48%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T L+I L + L LF FG + A ++ D T KG+GFV Y A AI
Sbjct: 451 TNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRITGLSKGYGFVKYADITMANNAIV 510
Query: 67 GMNGRIIQGRLIFVEPA 83
MNG ++GR I V A
Sbjct: 511 AMNGYRLEGRTIAVRVA 527
>Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:54300708-54296502 | 20130731
Length = 372
Score = 45.8 bits (107), Expect = 8e-06, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKA 64
T++F+ L++ T E ++ F FG + EA ++ D T R KG+GFV++ A +A
Sbjct: 29 TKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 86
>Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253164 | 20130731
Length = 250
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T++F+ L++ T ++ LK F FG + EA ++ D T + KG+GFV+++ A A +
Sbjct: 26 TKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQ 85
Query: 67 GMN----GRIIQGRLIFVEP 82
N GR L + +P
Sbjct: 86 NPNPMIDGRRANCNLAYQKP 105