Miyakogusa Predicted Gene
- Lj0g3v0078729.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0078729.1 Non Chatacterized Hit- tr|C5XDZ1|C5XDZ1_SORBI
Putative uncharacterized protein Sb02g039025
(Fragment,60.26,3e-19,RNA-binding domain, RBD,NULL; RRM_1,RNA
recognition motif domain; RNA recognition motif,RNA
recognit,CUFF.4022.1
(86 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 103 2e-23
AT5G59860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 83 4e-17
AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 82 6e-17
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 76 4e-15
AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 73 3e-14
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 73 4e-14
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 73 4e-14
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 4e-13
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 69 5e-13
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 69 6e-13
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 69 6e-13
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 69 6e-13
AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 2e-12
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 66 5e-12
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 66 5e-12
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 65 1e-11
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 65 1e-11
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 65 1e-11
AT1G07350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 1e-11
AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 2e-11
AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 2e-11
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 5e-11
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 62 1e-10
AT4G20030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 1e-10
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 61 2e-10
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei... 61 2e-10
AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 2e-10
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 60 2e-10
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-10
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-10
AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid bindin... 59 6e-10
AT3G10400.1 | Symbols: | RNA recognition motif and CCHC-type zi... 57 2e-09
AT4G35785.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-09
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 3e-09
AT4G35785.5 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 3e-09
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 4e-09
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 4e-09
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 4e-09
AT4G35785.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 4e-09
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 4e-09
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 56 5e-09
AT5G19030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 6e-09
AT5G44200.2 | Symbols: CBP20, ATCBP20 | CAP-binding protein 20 |... 55 7e-09
AT5G44200.1 | Symbols: CBP20, ATCBP20 | CAP-binding protein 20 |... 55 7e-09
AT4G35785.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 7e-09
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 55 7e-09
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 55 8e-09
AT4G35785.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 8e-09
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 8e-09
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 9e-09
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 9e-09
AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-08
AT5G06000.1 | Symbols: EIF3G2, ATEIF3G2 | eukaryotic translation... 55 1e-08
AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-08
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-08
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-08
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 54 2e-08
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 3e-08
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 3e-08
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 54 3e-08
AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 54 3e-08
AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 54 3e-08
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-08
AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1 small nuclear ribonu... 53 3e-08
AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-08
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 4e-08
AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 53 4e-08
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 53 5e-08
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 53 5e-08
AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 52 6e-08
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 52 6e-08
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 52 7e-08
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 8e-08
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 9e-08
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 9e-08
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 9e-08
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-07
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-07
AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-07
AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing... 51 1e-07
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-07
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 51 1e-07
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 2e-07
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 2e-07
AT2G43370.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-07
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 50 3e-07
AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 3e-07
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 50 3e-07
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 50 3e-07
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 50 4e-07
AT5G19030.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 4e-07
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 50 4e-07
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 50 4e-07
AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 5e-07
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 5e-07
AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 7e-07
AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 1e-06
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 48 1e-06
AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 48 1e-06
AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 1e-06
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 1e-06
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 48 2e-06
AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 47 2e-06
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 47 2e-06
AT1G53720.1 | Symbols: ATCYP59, CYP59 | cyclophilin 59 | chr1:20... 47 2e-06
AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 47 2e-06
AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 47 2e-06
AT5G03580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 47 2e-06
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 47 2e-06
AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 47 3e-06
AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A... 47 3e-06
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 47 3e-06
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 47 3e-06
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 47 3e-06
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 47 3e-06
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 47 3e-06
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 47 3e-06
AT5G18810.1 | Symbols: SCL28, At-SCL28 | SC35-like splicing fact... 47 3e-06
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 47 4e-06
AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 46 4e-06
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 46 5e-06
AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 46 5e-06
AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 46 5e-06
AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 46 6e-06
AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 46 6e-06
AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 45 7e-06
AT2G21440.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 45 8e-06
AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 45 9e-06
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 45 9e-06
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 45 9e-06
AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 45 9e-06
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 67/84 (79%)
Query: 1 MSQGIGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIE 60
M++ I +LF+SRLS +T+ + L+ LFSPFG + EA L+ D +T+RPKGFGF++++SE +
Sbjct: 1 MAKRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDD 60
Query: 61 AEKAIKGMNGRIIQGRLIFVEPAK 84
A KA+K ++G+I+ GRLIFVE AK
Sbjct: 61 ARKALKSLDGKIVDGRLIFVEVAK 84
>AT5G59860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24113462-24114449 FORWARD LENGTH=157
Length = 157
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 56/73 (76%), Gaps = 5/73 (6%)
Query: 12 SRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGMNGR 71
S LS +T+ + L+ LF+PF A L+ D +T+RPKGFGF+++ESE +A+KA+K +NG+
Sbjct: 76 SGLSAYTTDQSLRQLFAPF-----ARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGK 130
Query: 72 IIQGRLIFVEPAK 84
I+ GRLIFVE AK
Sbjct: 131 IVNGRLIFVETAK 143
>AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:27643801-27645386 REVERSE LENGTH=181
Length = 181
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 56/81 (69%)
Query: 4 GIGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEK 63
G T+L++S LSF T+++ L+ F FG + +V+D RPKGF F+ YE+E EA K
Sbjct: 74 GPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMK 133
Query: 64 AIKGMNGRIIQGRLIFVEPAK 84
AI+GM+G+ + GR+IFVE AK
Sbjct: 134 AIQGMHGKFLDGRVIFVEEAK 154
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 55/82 (67%)
Query: 3 QGIGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAE 62
+G+ ++LFI LSF T+++ L FS G V EA +V+D + R KGFGFV++ S EA+
Sbjct: 30 RGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQ 89
Query: 63 KAIKGMNGRIIQGRLIFVEPAK 84
KA+ NG+ + GR IFV+ AK
Sbjct: 90 KALMEFNGQQLNGRTIFVDYAK 111
>AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7331739-7333749 FORWARD LENGTH=374
Length = 374
Score = 73.2 bits (178), Expect = 3e-14, Method: Composition-based stats.
Identities = 34/77 (44%), Positives = 52/77 (67%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
+LFI+ LSF+TS++ L+ F FG + E +++D +KR KG+ F+ Y +E A A+K
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342
Query: 68 MNGRIIQGRLIFVEPAK 84
MNG+II G +I V+ AK
Sbjct: 343 MNGKIINGWMIVVDVAK 359
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%)
Query: 5 IGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKA 64
+ ++LF+ LS+ T LK F+ FG VTEAT++ D +T R +GFGFVS+ E A A
Sbjct: 33 MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92
Query: 65 IKGMNGRIIQGRLIFVEPA 83
IK M+G+ + GR I V A
Sbjct: 93 IKEMDGKELNGRQIRVNLA 111
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%)
Query: 5 IGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKA 64
+ ++LF+ LS+ T LK F+ FG VTEAT++ D +T R +GFGFVS+ E A A
Sbjct: 33 MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92
Query: 65 IKGMNGRIIQGRLIFVEPA 83
IK M+G+ + GR I V A
Sbjct: 93 IKEMDGKELNGRQIRVNLA 111
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 50/77 (64%)
Query: 5 IGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKA 64
+ TR+++ LS T+ + L+ FS +G V +A ++ D T R +GFGFV+Y S EAE A
Sbjct: 1 MATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAA 60
Query: 65 IKGMNGRIIQGRLIFVE 81
+ GM+G+ + GR + V+
Sbjct: 61 VSGMDGKELNGRRVSVK 77
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T+LFI LS+ T L+ F+ FG V +A +++D +T R +GFGFV++ E A AI
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 67 GMNGRIIQGRLIFVEPAK 84
M+G+ + GR I V PA
Sbjct: 95 EMDGKELNGRHIRVNPAN 112
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T+LFI LS+ T L+ F+ FG V +A +++D +T R +GFGFV++ E A AI
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 67 GMNGRIIQGRLIFVEPAK 84
M+G+ + GR I V PA
Sbjct: 95 EMDGKELNGRHIRVNPAN 112
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T+LFI LS+ T L+ F+ FG V +A +++D +T R +GFGFV++ E A AI
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 67 GMNGRIIQGRLIFVEPAK 84
M+G+ + GR I V PA
Sbjct: 95 EMDGKELNGRHIRVNPAN 112
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T+LFI LS+ T L+ F+ FG V +A +++D +T R +GFGFV++ E A AI
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 67 GMNGRIIQGRLIFVEPAK 84
M+G+ + GR I V PA
Sbjct: 95 EMDGKELNGRHIRVNPAN 112
>AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15743112-15744504 REVERSE LENGTH=142
Length = 142
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 49/74 (66%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
RLF+S LS T+ E+L+ F+ FG + +A ++ D + R KGFGFV+Y + +AEKA
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
Query: 68 MNGRIIQGRLIFVE 81
MN + + G +IFV+
Sbjct: 95 MNAKFLDGWVIFVD 108
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 49/77 (63%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
R F+ L++ T L+T F+ +G V ++ ++ D +T R +GFGFV+++ E + AI+G
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 68 MNGRIIQGRLIFVEPAK 84
MNG+ + GR I V A+
Sbjct: 69 MNGQDLDGRSITVNEAQ 85
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 49/77 (63%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
R F+ L++ T L+T F+ +G V ++ ++ D +T R +GFGFV+++ E + AI+G
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 68 MNGRIIQGRLIFVEPAK 84
MNG+ + GR I V A+
Sbjct: 69 MNGQDLDGRSITVNEAQ 85
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 49/77 (63%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
R F+ L++ T+ E L+ FS FG V ++ ++ D ++ R +GFGFV+++ E AI+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 68 MNGRIIQGRLIFVEPAK 84
MNG+ + GR+I V A+
Sbjct: 67 MNGKELDGRVITVNEAQ 83
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 49/77 (63%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
R F+ L++ T+ E L+ FS FG V ++ ++ D ++ R +GFGFV+++ E AI+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 68 MNGRIIQGRLIFVEPAK 84
MNG+ + GR+I V A+
Sbjct: 67 MNGKELDGRVITVNEAQ 83
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 49/77 (63%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
R F+ L++ T+ E L+ FS FG V ++ ++ D ++ R +GFGFV+++ E AI+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 68 MNGRIIQGRLIFVEPAK 84
MNG+ + GR+I V A+
Sbjct: 67 MNGKELDGRVITVNEAQ 83
>AT1G07350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:2258816-2259586 REVERSE LENGTH=129
Length = 129
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%)
Query: 2 SQGIGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEA 61
++ G L+++ LS ++ L+ F+ G VT+ LVLDP T+ +GFGF+S +S +A
Sbjct: 40 AENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDA 99
Query: 62 EKAIKGMNGRIIQGRLIFVE 81
+ I+ ++ ++QGR+I VE
Sbjct: 100 NRCIRSLDHSVLQGRVITVE 119
>AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22171332-22172656 FORWARD LENGTH=156
Length = 156
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 49/78 (62%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T LF+S LS T+ E L+T F+ FG V +A +V D + KGFGFV Y + ++ K I
Sbjct: 56 TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
Query: 67 GMNGRIIQGRLIFVEPAK 84
GM+G+ + G +IF E A+
Sbjct: 116 GMDGKFLDGWVIFAEYAR 133
>AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:11695350-11696563 REVERSE LENGTH=116
Length = 116
Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 53/83 (63%)
Query: 2 SQGIGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEA 61
S+ + LF+ +SF +++E L FS +G V + +++D RPKGF +V++ S+ EA
Sbjct: 16 SRSFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEA 75
Query: 62 EKAIKGMNGRIIQGRLIFVEPAK 84
EKA+ +N +++ GR++ ++ K
Sbjct: 76 EKALLELNAQLVDGRVVILDTTK 98
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
R+++ LS+ L++LFS G V EA ++ D + R KGFGFV+Y+S E + AIK
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263
Query: 67 GMNGRIIQGRLIFVEPAK 84
++G + GR I V A+
Sbjct: 264 SLDGADLDGRQIRVSEAE 281
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
+LF+ L F QL LF G V ++ D T R +GFGFV+ S E E A +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 68 MNGRIIQGRLIFV 80
NG + GR + V
Sbjct: 152 FNGYELDGRPLRV 164
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 49/78 (62%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
++LFI +++ ++ L+ F+ +G V + ++LD +T R +GFGFV++ S A AI+
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 67 GMNGRIIQGRLIFVEPAK 84
++GR + GR++ V A
Sbjct: 100 ALDGRDLHGRVVKVNYAN 117
>AT4G20030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:10846362-10847246 FORWARD LENGTH=152
Length = 152
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 5 IGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKA 64
+ +++ + L F TS++ LK FS FG + E L+ D KR KG+ F+ + S+ +A A
Sbjct: 38 LASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLA 97
Query: 65 IKGMNGRIIQGRLIFVEPAK 84
I+ M+ R+ GR+I+++ AK
Sbjct: 98 IETMDRRMYNGRMIYIDIAK 117
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 47/80 (58%)
Query: 5 IGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKA 64
+ T+L+I LS T + LK FS F VTEA ++ + T R +G+GFV++ SE A A
Sbjct: 29 MSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSA 88
Query: 65 IKGMNGRIIQGRLIFVEPAK 84
I MNG+ + G I V AK
Sbjct: 89 ISAMNGQELNGFNISVNVAK 108
>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 6
| chr1:6415226-6416283 FORWARD LENGTH=155
Length = 155
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
+++F+ LS T E LK F FG + +A +VLD ++ +GFGFV+Y+S A A++
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
Query: 67 GMNGRIIQGRLIFVEPAK 84
M + + GR+I V PA
Sbjct: 96 AMQNKELDGRIIGVHPAD 113
>AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:2257732-2260101 REVERSE LENGTH=382
Length = 382
Score = 60.8 bits (146), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 50/78 (64%)
Query: 6 GTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
G L+++ LS ++ L+ F+ G VT+ LVLDP T+ +GFGF+S +S +A + I
Sbjct: 74 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 133
Query: 66 KGMNGRIIQGRLIFVEPA 83
+ ++ ++QGR+I VE A
Sbjct: 134 RSLDHSVLQGRVITVEKA 151
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain
| chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%)
Query: 1 MSQGIGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIE 60
MS+ R FI L++ TS L+ F +G + EA +VLD + R +GFGF++++ +
Sbjct: 1 MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60
Query: 61 AEKAIKGMNGRIIQGRLIFVEPAK 84
++AI MNG + GR I V+ A+
Sbjct: 61 MDEAIAAMNGMDLDGRTITVDKAQ 84
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 60.5 bits (145), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 50/78 (64%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
+R+F+ LS+ ++ QL++ F +G +TE +++ T RP+GFGF+++ A+ AIK
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 67 GMNGRIIQGRLIFVEPAK 84
M+GR + ++I V A+
Sbjct: 72 HMHGRELGNKVISVNKAE 89
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 60.5 bits (145), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 50/78 (64%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
+R+F+ LS+ ++ QL++ F +G +TE +++ T RP+GFGF+++ A+ AIK
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 67 GMNGRIIQGRLIFVEPAK 84
M+GR + ++I V A+
Sbjct: 72 HMHGRELGNKVISVNKAE 89
>AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid
binding;RNA binding | chr4:10677482-10681623 FORWARD
LENGTH=816
Length = 816
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
RLF+ L + ++E+L FS FG ++E LVLD +TKR +G ++ Y A +A++
Sbjct: 295 RLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEE 354
Query: 68 MNGRIIQGRLIFVEPAK 84
++ QGRL+ + PAK
Sbjct: 355 LDNSSFQGRLLHILPAK 371
>AT3G10400.1 | Symbols: | RNA recognition motif and CCHC-type zinc
finger domains containing protein | chr3:3232636-3233421
FORWARD LENGTH=261
Length = 261
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
+ L++S L F + + TLFS FG V T++ D T++ +G FV Y S +A KA +
Sbjct: 57 STLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAAR 116
Query: 67 GMNGRIIQGRLIFVEPA 83
M+ +I+ GR + V A
Sbjct: 117 SMDAKILNGRKLTVSIA 133
>AT4G35785.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:16953708-16955127 REVERSE LENGTH=207
Length = 207
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 6 GTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
GT L+++ LS + + L+ F+ G V LV++P+T+ +GF FV+ S +AE+ I
Sbjct: 71 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCI 130
Query: 66 KGMNGRIIQGRLIFVE 81
K +N +++GR I VE
Sbjct: 131 KYLNQSVLEGRYITVE 146
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 56.6 bits (135), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
RL++ LS+ L+ LF+ G V EA ++ D + R KGFGFV+ S E +KAI
Sbjct: 279 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 338
Query: 68 MNGRIIQGRLIFVEPAK 84
+NG + GR I V A+
Sbjct: 339 LNGADLDGRQIRVSEAE 355
>AT4G35785.5 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:16953404-16955127 REVERSE LENGTH=244
Length = 244
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 3 QGIGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAE 62
+ GT L+++ LS + + L+ F+ G V LV++P+T+ +GF FV+ S +AE
Sbjct: 82 ENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAE 141
Query: 63 KAIKGMNGRIIQGRLIFVE 81
+ IK +N +++GR I VE
Sbjct: 142 RCIKYLNQSVLEGRYITVE 160
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 56.6 bits (135), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
RL++ LS+ L+ LF+ G V EA ++ D + R KGFGFV+ S E +KAI
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 68 MNGRIIQGRLIFVEPAK 84
+NG + GR I V A+
Sbjct: 318 LNGADLDGRQIRVSEAE 334
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 56.6 bits (135), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
RL++ LS+ L+ LF+ G V EA ++ D + R KGFGFV+ S E +KAI
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 68 MNGRIIQGRLIFVEPAK 84
+NG + GR I V A+
Sbjct: 318 LNGADLDGRQIRVSEAE 334
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 56.6 bits (135), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
RL++ LS+ L+ LF+ G V EA ++ D + R KGFGFV+ S E +KAI
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 68 MNGRIIQGRLIFVEPAK 84
+NG + GR I V A+
Sbjct: 318 LNGADLDGRQIRVSEAE 334
>AT4G35785.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:16953404-16955127 REVERSE LENGTH=201
Length = 201
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 3 QGIGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAE 62
+ GT L+++ LS + + L+ F+ G V LV++P+T+ +GF FV+ S +AE
Sbjct: 82 ENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAE 141
Query: 63 KAIKGMNGRIIQGRLIFVE 81
+ IK +N +++GR I VE
Sbjct: 142 RCIKYLNQSVLEGRYITVE 160
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
+LF+ LS+ + E L F G V A +V D T R +G+GFV Y S+ E E A++
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 68 MNGRIIQGRLIFVEPAK 84
++G ++GR I V A+
Sbjct: 238 LDGFELEGRAIRVNLAQ 254
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
R+++ L + +L+ LFS G V EA +V D +T R +GFGFV+ E +AI
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 68 MNGRIIQGRLIFVEPAK 84
++G+ ++GR I V A+
Sbjct: 305 LDGQNLEGRAIRVNVAE 321
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
+LF+ L++ + + L LF G V A ++ + +T + +GFGFV+ S EAE A++
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 68 MNGRIIQGRLIFVEPA 83
N + GRL+ V A
Sbjct: 211 FNRYDLNGRLLTVNKA 226
>AT5G19030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6357503-6359081 REVERSE LENGTH=172
Length = 172
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%)
Query: 10 FISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGMN 69
F+ S S+ +LK +FS FG VT ++ + +T++ G+G+V + S+ +A+ A++ MN
Sbjct: 80 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 139
Query: 70 GRIIQGRLIFVE 81
G+ GR I V+
Sbjct: 140 GKFFDGRFILVK 151
>AT5G44200.2 | Symbols: CBP20, ATCBP20 | CAP-binding protein 20 |
chr5:17802062-17803875 REVERSE LENGTH=257
Length = 257
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T ++I +SF+T++EQL LFS G + + + LD TK P GF FV + S + E A+K
Sbjct: 34 TTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVK 93
Query: 67 GMNGRIIQGRLIFVE 81
++G I+ R I V+
Sbjct: 94 YISGTILDDRPIRVD 108
>AT5G44200.1 | Symbols: CBP20, ATCBP20 | CAP-binding protein 20 |
chr5:17802062-17803875 REVERSE LENGTH=257
Length = 257
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T ++I +SF+T++EQL LFS G + + + LD TK P GF FV + S + E A+K
Sbjct: 34 TTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVK 93
Query: 67 GMNGRIIQGRLIFVE 81
++G I+ R I V+
Sbjct: 94 YISGTILDDRPIRVD 108
>AT4G35785.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:16953211-16955127 REVERSE LENGTH=239
Length = 239
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 50/82 (60%)
Query: 3 QGIGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAE 62
+ GT L+++ LS + + L+ F+ G V LV++P+T+ +GF FV+ S +AE
Sbjct: 68 ENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAE 127
Query: 63 KAIKGMNGRIIQGRLIFVEPAK 84
+ IK +N +++GR I VE ++
Sbjct: 128 RCIKYLNQSVLEGRYITVERSR 149
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 6 GTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
G L++ L E+LK +FS +G VT + ++L+P+ +GFGFV+Y + EA +A+
Sbjct: 331 GANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMS-RGFGFVAYSNPEEALRAL 389
Query: 66 KGMNGRIIQGRLIFV 80
MNG++I + +++
Sbjct: 390 SEMNGKMIGRKPLYI 404
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
+FI L + L FS FG + + +D T R KG+GFV +E E A+ AI +
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 69 NGRIIQGRLIFV 80
NG ++ + +FV
Sbjct: 197 NGMLMNDKQVFV 208
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
R+++ L + +L+ LFS G V +A +V D +T R +GFGFV +E E AI
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 68 MNGRIIQGRLIFVEPAK 84
++G+ ++GR I V A+
Sbjct: 268 LDGQNLEGRAIKVNVAE 284
>AT4G35785.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:16953211-16955127 REVERSE LENGTH=238
Length = 238
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 50/82 (60%)
Query: 3 QGIGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAE 62
+ GT L+++ LS + + L+ F+ G V LV++P+T+ +GF FV+ S +AE
Sbjct: 67 ENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAE 126
Query: 63 KAIKGMNGRIIQGRLIFVEPAK 84
+ IK +N +++GR I VE ++
Sbjct: 127 RCIKYLNQSVLEGRYITVERSR 148
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 55.5 bits (132), Expect = 8e-09, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 49/74 (66%), Gaps = 4/74 (5%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
++F+ L+ ++ + K F+ FG +T+ ++ D +T+RP+GFGF+SY+SE +K ++
Sbjct: 129 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 188
Query: 68 ----MNGRIIQGRL 77
+NG++++ +L
Sbjct: 189 TFHELNGKMVEVKL 202
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
+LFI +S+ TS+++L+ F FG V EA ++ D T R +GFGFV + AE+ +
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV-- 64
Query: 68 MNGRIIQGRLI 78
+ II G+++
Sbjct: 65 LLKHIIDGKIL 75
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 49/74 (66%), Gaps = 4/74 (5%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
++F+ L+ ++ + K F+ FG +T+ ++ D +T+RP+GFGF+SY+SE +K ++
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 166
Query: 68 ----MNGRIIQGRL 77
+NG++++ +L
Sbjct: 167 TFHELNGKMVEVKL 180
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
+LFI +S+ TS+++L+ F FG V EA ++ D T R +GFGFV + AE+ +
Sbjct: 6 CKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV- 64
Query: 67 GMNGRIIQGRLI 78
+ II G+++
Sbjct: 65 -LLKHIIDGKIV 75
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 49/74 (66%), Gaps = 4/74 (5%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
++F+ L+ ++ + K F+ FG +T+ ++ D +T+RP+GFGF+SY+SE +K ++
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 166
Query: 68 ----MNGRIIQGRL 77
+NG++++ +L
Sbjct: 167 TFHELNGKMVEVKL 180
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
+LFI +S+ TS+++L+ F FG V EA ++ D T R +GFGFV + AE+ +
Sbjct: 6 CKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV- 64
Query: 67 GMNGRIIQGRLI 78
+ II G+++
Sbjct: 65 -LLKHIIDGKIV 75
>AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304106 REVERSE LENGTH=371
Length = 371
Score = 55.1 bits (131), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 49/74 (66%), Gaps = 4/74 (5%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
++F+ L+ ++ + K F+ FG +T+ ++ D +T+RP+GFGF+SY+SE +K ++
Sbjct: 47 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 106
Query: 68 ----MNGRIIQGRL 77
+NG++++ +L
Sbjct: 107 TFHELNGKMVEVKL 120
>AT5G06000.1 | Symbols: EIF3G2, ATEIF3G2 | eukaryotic translation
initiation factor 3G2 | chr5:1808169-1809742 FORWARD
LENGTH=308
Length = 308
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 37/60 (61%)
Query: 11 ISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGMNG 70
++ LS T L LF PFGAVT + +D KT +GFGFVS+ S +A++AI +NG
Sbjct: 210 VTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNG 269
>AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:2829341-2834189 FORWARD LENGTH=690
Length = 690
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
RLF+ L + T++E+L FS FG ++E LVLD T+ +G FV Y A+ A+
Sbjct: 228 RLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDK 287
Query: 68 MNGRIIQGRLIFVEPAK 84
++ QGR + + PAK
Sbjct: 288 LDKLPFQGRTLHILPAK 304
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
+LFI +S+ T +E+L+ FS +G V EA ++ D T R +GFGF+ + +E+ I
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 68 MNGRIIQGRLIFVEPA 83
M+ II GR + + A
Sbjct: 65 MDKHIIDGRTVEAKKA 80
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 4 GIGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAE- 62
G ++F+ L ++E+ K F FG + + ++ D T+RP+GFGF++++S+ +
Sbjct: 107 GRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDR 166
Query: 63 ---KAIKGMNGRIIQ 74
K +NG++++
Sbjct: 167 VLHKTFHELNGKLVE 181
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
+LFI +S+ T +E+L+ FS +G V EA ++ D T R +GFGF+ + +E+ I
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 68 MNGRIIQGRLIFVEPA 83
M+ II GR + + A
Sbjct: 65 MDKHIIDGRTVEAKKA 80
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 4 GIGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAE- 62
G ++F+ L ++E+ K F FG + + ++ D T+RP+GFGF++++S+ +
Sbjct: 107 GRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDR 166
Query: 63 ---KAIKGMNGRIIQ 74
K +NG++++
Sbjct: 167 VLHKTFHELNGKLVE 181
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
+ L++ L S E+LK +FSPFG VT + ++ DP KG GFV++ + EA +A+
Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTS-KGSGFVAFATPEEATEAMS 376
Query: 67 GMNGRIIQGRLIFV 80
++G++I+ + ++V
Sbjct: 377 QLSGKMIESKPLYV 390
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
+FI L + L FS FG + + +D + + KG+GFV Y +E A+KAI+
Sbjct: 125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEK 183
Query: 68 MNGRIIQGRLIFVEP 82
+NG ++ + ++V P
Sbjct: 184 LNGMLLNDKQVYVGP 198
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T +++ L+ T+ + LK F +G +T A ++ D + K KGFGFV++E+ +A +A++
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKS-KGFGFVNFENADDAARAVE 273
Query: 67 GMNGRIIQGRLIFV 80
+NG + +V
Sbjct: 274 SLNGHKFDDKEWYV 287
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
+LFI +S+ T +E+L+ FS +G V EA ++ D T R +GFGF+ + +E+ I
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 68 MNGRIIQGRLIFVEPA 83
M+ II GR + + A
Sbjct: 65 MDKHIIDGRTVEAKKA 80
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 4 GIGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAE- 62
G ++F+ L ++E+ K F FG + + ++ D T+RP+GFGF++++S+ +
Sbjct: 107 GRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDR 166
Query: 63 ---KAIKGMNGRIIQ 74
K +NG++++
Sbjct: 167 VLHKTFHELNGKLVE 181
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
+LFI +S+ T +E+L+ FS +G V EA ++ D T R +GFGF+ + +E+ I
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 68 MNGRIIQGRLIFVEPA 83
M+ II GR + + A
Sbjct: 65 MDKHIIDGRTVEAKKA 80
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 4 GIGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAE- 62
G ++F+ L ++E+ K F FG + + ++ D T+RP+GFGF++++S+ +
Sbjct: 107 GRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDR 166
Query: 63 ---KAIKGMNGRIIQ 74
K +NG++++
Sbjct: 167 VLHKTFHELNGKLVE 181
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
+++F+ +S+ T + L+ FS +G V +A +++D +T R +GF FV++ S EA A++
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Query: 67 GMNGRIIQGRLIFVEPA 83
++G+ + GR I V A
Sbjct: 94 -LDGQDLHGRRIRVNYA 109
>AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 47/76 (61%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
L + ++F T+ + L LF+ +G V + + D +T +GF FV Y+ + EA KA++ +
Sbjct: 18 LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERL 77
Query: 69 NGRIIQGRLIFVEPAK 84
+GR++ GR I V+ AK
Sbjct: 78 DGRVVDGREITVQFAK 93
>AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 47/76 (61%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
L + ++F T+ + L LF+ +G V + + D +T +GF FV Y+ + EA KA++ +
Sbjct: 18 LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERL 77
Query: 69 NGRIIQGRLIFVEPAK 84
+GR++ GR I V+ AK
Sbjct: 78 DGRVVDGREITVQFAK 93
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 6 GTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
G LFI + ++L F PFG V A + +D T K FGF+SY+S+ A+ AI
Sbjct: 338 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI 397
Query: 66 KGMNGRIIQGRLIFVE 81
MNG + G+ + V+
Sbjct: 398 NTMNGCQLSGKKLKVQ 413
>AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1 small nuclear
ribonucleoprotein-70K | chr3:18826476-18829492 REVERSE
LENGTH=427
Length = 427
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
LF+SRL++ +S+ ++K F +G + LV D T +PKG+ F+ Y + + A K
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 69 NGRIIQGRLIFVE 81
+G+ I GR + V+
Sbjct: 200 DGQKIDGRRVLVD 212
>AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=429
Length = 429
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 6 GTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
G LFI + ++L F PFG V A + +D T K FGF+SY+S+ A+ AI
Sbjct: 329 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI 388
Query: 66 KGMNGRIIQGRLIFVE 81
MNG + G+ + V+
Sbjct: 389 NTMNGCQLSGKKLKVQ 404
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
+LFI LS+ ++ LK FS FG V E + D + R +GFGFV + E +A A
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 68 MNGRIIQGR 76
M+G+ + GR
Sbjct: 102 MDGKGLLGR 110
>AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=321
Length = 321
Score = 53.1 bits (126), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 11 ISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGMNG 70
++ LS T + L LF PFGAVT + +D KT +GFGFV++ S +A++AI +NG
Sbjct: 244 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 303
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 52.8 bits (125), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 2 SQGIGTR---LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESE 58
S G+ +R +F+ LS T++E+ K+ F FG T+ ++ D T RP+GFGFV+Y+SE
Sbjct: 112 SNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSE 171
Query: 59 IEAE 62
E
Sbjct: 172 DSVE 175
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
+LF+ ++ TS+E LK FS +GAV EA + + T +P+GFGFV + ++ + KA++
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALR 65
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 52.8 bits (125), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 42/70 (60%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
+F+ LS + L FS F + ++A ++ D KT R +GFGFVS+ ++ +A+ AI M
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 209
Query: 69 NGRIIQGRLI 78
NG+ + R I
Sbjct: 210 NGKWVSSRQI 219
>AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=294
Length = 294
Score = 52.4 bits (124), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 11 ISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGMNG 70
++ LS T + L LF PFGAVT + +D KT +GFGFV++ S +A++AI +NG
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 276
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
R F+ L++ T+ E L+ FS FG V ++ ++ D ++ R +GFGFV+++ E AI+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 68 MN 69
MN
Sbjct: 67 MN 68
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 52.4 bits (124), Expect = 7e-08, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 6 GTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
G L++ L + E+L+ LF+ FG +T ++ DP + KG GFV++ + EA + +
Sbjct: 327 GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVL 385
Query: 66 KGMNGRIIQGRLIFVEPAK 84
MNG+++ G+ ++V A+
Sbjct: 386 NEMNGKMVGGKPLYVALAQ 404
Score = 46.2 bits (108), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T +++ LS T+ ++LKT F +G+++ A ++ D K + FGFV++E+ +A +A++
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKS-RCFGFVNFENPEDAARAVE 283
Query: 67 GMNGRIIQGRLIFVEPAK 84
+NG+ + +V A+
Sbjct: 284 ALNGKKFDDKEWYVGKAQ 301
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 52.0 bits (123), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 42/70 (60%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
+F+ LS + L FS F + ++A ++ D KT R +GFGFVS+ ++ +A+ AI M
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205
Query: 69 NGRIIQGRLI 78
NG+ + R I
Sbjct: 206 NGKWLSSRQI 215
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T++F+ L++ T ++ ++ F FG + EA ++ D T R KG+GFV+++ A +A +
Sbjct: 22 TKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQ 81
Query: 67 GMNGRIIQGR 76
MN +I GR
Sbjct: 82 NMN-PVIDGR 90
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 52.0 bits (123), Expect = 9e-08, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI-- 65
++F+ L ++ KT F FG T+ ++ D T+RP+GFGF++Y+SE EK +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168
Query: 66 --KGMNGRIIQ 74
+NG++++
Sbjct: 169 TFHELNGKMVE 179
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK- 66
+LFI +S+ T++E+LK FS FG V EA ++ D T R +GFGFV + AE I
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 67 --GMNGRIIQGR 76
++GR+++ +
Sbjct: 67 KHNIDGRLVEAK 78
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 52.0 bits (123), Expect = 9e-08, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI-- 65
++F+ L ++ KT F FG T+ ++ D T+RP+GFGF++Y+SE EK +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168
Query: 66 --KGMNGRIIQ 74
+NG++++
Sbjct: 169 TFHELNGKMVE 179
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK- 66
+LFI +S+ T++E+LK FS FG V EA ++ D T R +GFGFV + AE I
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 67 --GMNGRIIQGR 76
++GR+++ +
Sbjct: 67 KHNIDGRLVEAK 78
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
++++ L+ +KE L+ LFS G V A + P T + GFGFV++ SE + E AI
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 68 MNGRIIQGRLIFVEPA 83
+N +++G+ I V A
Sbjct: 238 LNNSLLEGQKIRVNKA 253
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
++++ L+ +KE L+ LFS G V A + P T + GFGFV++ SE + E AI
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 68 MNGRIIQGRLIFVEPA 83
+N +++G+ I V A
Sbjct: 238 LNNSLLEGQKIRVNKA 253
>AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21798382-21799109 FORWARD LENGTH=169
Length = 169
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T++++ L + T KE L F FG + +V D +T R +G+GFV+++ A +A K
Sbjct: 13 TKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACK 72
Query: 67 GMN----GRIIQGRLIFV 80
N GRI +L FV
Sbjct: 73 DPNPTIEGRITNCKLAFV 90
>AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:8383856-8386604 FORWARD LENGTH=613
Length = 613
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI--- 65
+F+ + T++E LKT F +G + E ++V+D T R KG+GFV +++ A +A+
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRP 469
Query: 66 -KGMNGRIIQGRLIFVEPAK 84
K M RI+ L +P K
Sbjct: 470 EKRMYNRIVVCNLASEKPGK 489
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 48/84 (57%)
Query: 1 MSQGIGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIE 60
M+ G+R+F+ LS + L+ FS FG + + ++L+ T R +GFGF+++
Sbjct: 1 MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60
Query: 61 AEKAIKGMNGRIIQGRLIFVEPAK 84
+++I+ M+GR R+I V A+
Sbjct: 61 MDESIREMHGRDFGDRVISVNRAE 84
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 41/76 (53%)
Query: 6 GTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
G LFI + ++L F FG V A + +D T K FGFVSY+S+ A+ AI
Sbjct: 348 GANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAI 407
Query: 66 KGMNGRIIQGRLIFVE 81
MNGR + G+ + V+
Sbjct: 408 DMMNGRHLGGKKLKVQ 423
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
+LFI +S+ T +E+L+ F +G + EA ++ D T R +GFGF+ + AE+ I
Sbjct: 13 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI-- 70
Query: 68 MNGRIIQGRLIFVEPA 83
M+ II GR + + A
Sbjct: 71 MDKHIIDGRTVEAKKA 86
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAE----K 63
++F+ L ++ + K F FG + + ++ D T+RP+GFGF++++SE + K
Sbjct: 120 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK 179
Query: 64 AIKGMNGRIIQ 74
+NG++++
Sbjct: 180 TFHELNGKMVE 190
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
+LFI +S+ T +E+L+ F +G + EA ++ D T R +GFGF+ + AE+ I
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI-- 73
Query: 68 MNGRIIQGRLIFVEPA 83
M+ II GR + + A
Sbjct: 74 MDKHIIDGRTVEAKKA 89
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAE----K 63
++F+ L ++ + K F FG + + ++ D T+RP+GFGF++++SE + K
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK 182
Query: 64 AIKGMNGRIIQ 74
+NG++++
Sbjct: 183 TFHELNGKMVE 193
>AT2G43370.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18013431-18015376 FORWARD LENGTH=333
Length = 333
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
LF+ RLS T+++ L+ + S +G + LV T +G+GFV YE+E E +A +
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 69 NGRIIQGRLIFVE 81
+ +I GR I V+
Sbjct: 126 HHSLIDGREIIVD 138
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK- 66
+L++ L F S+ QL+ +F FG V L LDP+T + KGFGF+ + ++E KA +
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF-VQLEHSKAAQI 324
Query: 67 GMNGRI-IQGRLIFV 80
+NG++ I GR I V
Sbjct: 325 ALNGKLEIAGRTIKV 339
>AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9392397-9393545 REVERSE LENGTH=382
Length = 382
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
+F+ L + T+ E LK F +G +TE ++V+D T R KGFGFV +++ A A+K
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNP 224
Query: 69 NGRIIQGRLIFVEPAK 84
R+ R + PA+
Sbjct: 225 EKRMYN-RTVSCLPAR 239
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 6 GTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
G+ L++ L + ++L+ F+PFG +T ++ DP + +G GFV++ + EA +AI
Sbjct: 326 GSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAI 384
Query: 66 KGMNGRIIQGRLIFVEPAK 84
MNG++I + ++V A+
Sbjct: 385 TEMNGKMIVTKPLYVALAQ 403
Score = 48.5 bits (114), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T +++ LS S E+L +F FG T ++ D + K KGFGFV++E+ +A +A+
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKS-KGFGFVNFENSDDAARAVD 282
Query: 67 GMNGRIIQGRLIFVEPAK 84
+NG+ + FV A+
Sbjct: 283 ALNGKTFDDKEWFVGKAQ 300
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 4 GIGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEK 63
G+G +FI L + L FS FG + + +DP + + KG+GFV Y+++ A+
Sbjct: 131 GVGN-IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQG 188
Query: 64 AIKGMNGRIIQGRLIFVEP 82
AI +NG ++ + ++V P
Sbjct: 189 AIDKLNGMLLNDKQVYVGP 207
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 6 GTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
G+ L++ L + ++L+ F+PFG +T ++ DP + +G GFV++ + EA +AI
Sbjct: 326 GSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAI 384
Query: 66 KGMNGRIIQGRLIFVEPAK 84
MNG++I + ++V A+
Sbjct: 385 TEMNGKMIVTKPLYVALAQ 403
Score = 48.5 bits (114), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T +++ LS S E+L +F FG T ++ D + K KGFGFV++E+ +A +A+
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKS-KGFGFVNFENSDDAARAVD 282
Query: 67 GMNGRIIQGRLIFVEPAK 84
+NG+ + FV A+
Sbjct: 283 ALNGKTFDDKEWFVGKAQ 300
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 4 GIGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEK 63
G+G +FI L + L FS FG + + +DP + + KG+GFV Y+++ A+
Sbjct: 131 GVGN-IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQG 188
Query: 64 AIKGMNGRIIQGRLIFVEP 82
AI +NG ++ + ++V P
Sbjct: 189 AIDKLNGMLLNDKQVYVGP 207
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 2 SQGIGTRLFISRLSFFTSKEQLKTLFSPFGAV-TEATLVLDPKTKRPKGFGFVSYESEIE 60
S +G LFI L ++ L FS FG + + ++ DP T +GFGF+SY+S
Sbjct: 107 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEA 166
Query: 61 AEKAIKGMNGRIIQGRLIFVEPA 83
++ AI+ M G+ + R I V A
Sbjct: 167 SDAAIESMTGQYLSNRQITVSYA 189
>AT5G19030.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6357570-6359024 REVERSE LENGTH=126
Length = 126
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 41/63 (65%)
Query: 10 FISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGMN 69
F+ S S+ +LK +FS FG VT ++ + +T++ G+G+V + S+ +A+ A++ MN
Sbjct: 61 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 120
Query: 70 GRI 72
G++
Sbjct: 121 GKV 123
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 6 GTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
G+ L++ L + E+LK +FS +G VT ++++ + +GFGFV+Y + EA A+
Sbjct: 341 GSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAM 399
Query: 66 KGMNGRIIQGRLIFVEPAK 84
K MNG++I + ++V A+
Sbjct: 400 KEMNGKMIGRKPLYVALAQ 418
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 6 GTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
G+ L++ L + E+LK +FS +G VT ++++ + +GFGFV+Y + EA A+
Sbjct: 341 GSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAM 399
Query: 66 KGMNGRIIQGRLIFVEPAK 84
K MNG++I + ++V A+
Sbjct: 400 KEMNGKMIGRKPLYVALAQ 418
>AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107949 FORWARD LENGTH=347
Length = 347
Score = 49.3 bits (116), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 1 MSQGIG------TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVS 54
M+ GIG T++F+ L++ T KE +K F FG + EA ++ D + R KG+GFV+
Sbjct: 1 MAGGIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVT 60
Query: 55 YESEIEAEKAIKGMNGRIIQGR 76
+ E EA ++ +I GR
Sbjct: 61 FR-EAEAARSACVDATPVIDGR 81
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 49.3 bits (116), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAE----K 63
++F+ L + ++ + F +G V++A +++D T+RP+GFGFVS++SE + K
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHK 170
Query: 64 AIKGMNGRIIQ 74
+NG+ ++
Sbjct: 171 TFHDLNGKQVE 181
>AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21806622-21807012 FORWARD LENGTH=100
Length = 100
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T+++++ L + T E L + F FG + A +V D T+R KGFGFV++ A +A +
Sbjct: 9 TKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACE 68
Query: 67 GMN----GRIIQGRLIFV 80
N GR + +L ++
Sbjct: 69 NPNHTIDGRTVNCKLAYL 86
>AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107618 FORWARD LENGTH=242
Length = 242
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 1 MSQGIG------TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVS 54
M+ GIG T++F+ L++ T KE +K F FG + EA ++ D + R KG+GFV+
Sbjct: 1 MAGGIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVT 60
Query: 55 YESEIEAEKAIKGMNGRIIQGR 76
+ E EA ++ +I GR
Sbjct: 61 FR-EAEAARSACVDATPVIDGR 81
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE LENGTH=352
Length = 352
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 41/73 (56%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
+++ + F ++ L +FS +G + + L+ D T + KGF F++YE + A+ +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 69 NGRIIQGRLIFVE 81
NG ++ GR I V+
Sbjct: 98 NGALVLGRTIKVD 110
>AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9389407-9390450 REVERSE LENGTH=347
Length = 347
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 42/66 (63%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
++F+ L + T++E L +F +G + E T+V+D T + KGFGFV +++ A++A+K
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 68 MNGRII 73
RI+
Sbjct: 165 PKKRIL 170
>AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107659 FORWARD LENGTH=249
Length = 249
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 1 MSQGIG------TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVS 54
M+ GIG T++F+ L++ T KE +K F FG + EA ++ D + R KG+GFV+
Sbjct: 1 MAGGIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVT 60
Query: 55 YESEIEAEKAIKGMNGRIIQGR 76
+ E EA ++ +I GR
Sbjct: 61 FR-EAEAARSACVDATPVIDGR 81
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 8 RLFISRLSFFTSKEQLKTLF--SPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
+L++S L++ L+ LF + F V+ + DP+ R G+GFVS+ + EAE AI
Sbjct: 195 KLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPE-GRSSGYGFVSFATREEAENAI 253
Query: 66 KGMNGRIIQGRLI 78
+NG+ I GR I
Sbjct: 254 TKLNGKEIMGRPI 266
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
RL++ L + + +L +F G V + +V D T R +GFGFV+ S EA++A++
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 68 MNGRIIQGRLIFV 80
N I GR + V
Sbjct: 177 FNSSQIGGRTVKV 189
>AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29449246 FORWARD LENGTH=271
Length = 271
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T++F+ L++ T ++++ F FG + EA ++ D T + KG+GFV++ A +A+
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVA 76
Query: 67 GMNGRIIQGR 76
N +I GR
Sbjct: 77 DPN-PVIDGR 85
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
+ +++ ++ ++E+L+ FS G +T L+ D K K KGFGFV + + EA A+K
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKS-KGFGFVCFSTPEEAIDAVK 362
Query: 67 GMNGRIIQGRLIFVEPAK 84
+G++ G+ ++V A+
Sbjct: 363 TFHGQMFHGKPLYVAIAQ 380
>AT1G53720.1 | Symbols: ATCYP59, CYP59 | cyclophilin 59 |
chr1:20057012-20059508 FORWARD LENGTH=506
Length = 506
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
LF+ +L+ T E L T+FS FG V A ++ D KT + F+ +E++ E+A M
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304
Query: 69 NGRIIQGRLIFVE 81
+ +I R I V+
Sbjct: 305 DNALIDDRRIHVD 317
>AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18432902-18436629 FORWARD LENGTH=809
Length = 809
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 41/68 (60%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
+F+ L S+E LK +F G VTE ++ +P+TK+ KG F+ + + +A++A+K +
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKEL 275
Query: 69 NGRIIQGR 76
+I G+
Sbjct: 276 KSPMINGK 283
>AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6744029-6746133 FORWARD LENGTH=337
Length = 337
Score = 47.0 bits (110), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 1 MSQGIGTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIE 60
M+ G +++ L + ++E ++ +FS +G+V +V D ++ R K +GFV++ +
Sbjct: 1 MTMDDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVND-RSVRGKCYGFVTFSNRRS 59
Query: 61 AEKAIKGMNGRIIQGRLIFV 80
A+ AI+ M+G+ I GR + V
Sbjct: 60 ADDAIEDMDGKSIGGRAVRV 79
>AT5G03580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:906956-907422 REVERSE LENGTH=101
Length = 101
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T L+I+ L S+E L +FS FG V + L D + + +GF F+ +ES A +A+
Sbjct: 17 TSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGE-SRGFAFIEFESADSAGRAML 75
Query: 67 GMNGRIIQGRLIFVE 81
M+GR+I +++ V+
Sbjct: 76 HMDGRLIGQKILCVQ 90
>AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29450181 FORWARD LENGTH=287
Length = 287
Score = 47.0 bits (110), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T++F+ L++ T ++++ F FG + EA ++ D T + KG+GFV++ A +A+
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVA 76
Query: 67 GMNGRIIQGR 76
N +I GR
Sbjct: 77 DPN-PVIDGR 85
>AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9388571-9390450 REVERSE LENGTH=343
Length = 343
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 42/67 (62%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKG 67
++F+ L + T++E L +F +G + E T+V+D T + KGFGFV +++ A++A+K
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 68 MNGRIIQ 74
RI+
Sbjct: 165 PKKRILN 171
>AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=430
Length = 430
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVT----EATLVLDPKTKRPKGFGFVSYESEIEAEKA 64
+F+ LS + L FS F + + +A ++ D KT R +GFGFVS+ ++ +A+ A
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTA 209
Query: 65 IKGMNGRIIQGRLI 78
I MNG+ + R I
Sbjct: 210 INEMNGKWVSSRQI 223
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
+F+ LS + L T FS + ++A ++ D KT R +GFGFVS+ ++ +A+ AI +
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
Query: 69 NGRIIQGRLI 78
G+ + R I
Sbjct: 201 TGKWLGSRQI 210
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
+F+ LS + L T FS + ++A ++ D KT R +GFGFVS+ ++ +A+ AI +
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
Query: 69 NGRIIQGRLI 78
G+ + R I
Sbjct: 201 TGKWLGSRQI 210
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 38/77 (49%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T L+I L + L LFS FG + A ++ D T KG+GFV Y A A++
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 67 GMNGRIIQGRLIFVEPA 83
MNG +GR + V A
Sbjct: 540 AMNGYRFEGRTLAVRIA 556
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 38/77 (49%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T L+I L + L LFS FG + A ++ D T KG+GFV Y A A++
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 67 GMNGRIIQGRLIFVEPA 83
MNG +GR + V A
Sbjct: 540 AMNGYRFEGRTLAVRIA 556
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 38/77 (49%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T L+I L + L LFS FG + A ++ D T KG+GFV Y A A++
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 67 GMNGRIIQGRLIFVEPA 83
MNG +GR + V A
Sbjct: 540 AMNGYRFEGRTLAVRIA 556
>AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886693-7889241 FORWARD LENGTH=291
Length = 291
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T++F+ L++ T ++++ F FG + EA ++ D T + KG+GFV++ A +A+
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVA 76
Query: 67 GMNGRIIQGR 76
N +I GR
Sbjct: 77 DPN-PVIDGR 85
>AT5G18810.1 | Symbols: SCL28, At-SCL28 | SC35-like splicing factor
28 | chr5:6268925-6271158 REVERSE LENGTH=236
Length = 236
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
L I L L+ F FG + + L + T P+GFGFV Y +A +A+K M
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108
Query: 69 NGRIIQGR---LIFVEPAKMT 86
N ++I GR ++F E + T
Sbjct: 109 NHKVIGGREIAIVFAEENRKT 129
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESE 58
++F+ L + E+ + F +G VT+ ++ D T RP+GFGFVS++SE
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSE 161
>AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2199653-2201150 REVERSE LENGTH=317
Length = 317
Score = 46.2 bits (108), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T++F+ L++ T+ + L+ F FG V +A +V + R KG+GF+++ + +A++
Sbjct: 12 TKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQ 71
Query: 67 GMNGRIIQGR 76
+ II GR
Sbjct: 72 N-SKPIIDGR 80
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 46.2 bits (108), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
+LF+ +S+ T+ E F FG V ++ ++ D T P+GFGFV++ AEK ++
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE 125
>AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=245
Length = 245
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T++F+ L++ T K L+ F FG + EA ++ D + R KG+GFV++ A+KA
Sbjct: 7 TKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACV 66
Query: 67 GMNGRIIQGR 76
+I GR
Sbjct: 67 DP-APVIDGR 75
>AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=244
Length = 244
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T++F+ L++ T K L+ F FG + EA ++ D + R KG+GFV++ A+KA
Sbjct: 7 TKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACV 66
Query: 67 GMNGRIIQGR 76
+I GR
Sbjct: 67 DP-APVIDGR 75
>AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 34/48 (70%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSY 55
+LFI L+ T+ E L++LFS +G + EA ++LD T + KG+GFV++
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
>AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 34/48 (70%)
Query: 8 RLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSY 55
+LFI L+ T+ E L++LFS +G + EA ++LD T + KG+GFV++
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
>AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:20273863-20275827 REVERSE LENGTH=261
Length = 261
Score = 45.4 bits (106), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIK 66
T++F+ L++ T KE + F +G + EA ++ D T+R KG+GFV+++ A +A +
Sbjct: 17 TKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACE 76
Query: 67 GMNGRIIQGR 76
+ II GR
Sbjct: 77 D-STPIINGR 85
>AT2G21440.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9173712-9179065 REVERSE LENGTH=1003
Length = 1003
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 9 LFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAIKGM 68
LFI L F +KE++K F+ FG V +LVL TKRP+G FV +++ + AI
Sbjct: 563 LFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISAA 622
Query: 69 N-----GRIIQGRLIFV 80
+ G +++GR + V
Sbjct: 623 DTASGVGVLLKGRQLNV 639
>AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 45.4 bits (106), Expect = 9e-06, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKA 64
T++F+ L++ T E L+ F +G + EA ++ D T R KG+GFV++ A +A
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 81
>AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 45.4 bits (106), Expect = 9e-06, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKA 64
T++F+ L++ T E L+ F +G + EA ++ D T R KG+GFV++ A +A
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 81
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 45.1 bits (105), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 6 GTRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKAI 65
G L++ L +L+ LFS FG +T +++ KG GFV + + EA KA+
Sbjct: 222 GMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVH-SNGISKGVGFVEFSTSEEASKAM 280
Query: 66 KGMNGRIIQGRLIFVEPAK 84
MNG+++ + I+V A+
Sbjct: 281 LKMNGKMVGNKPIYVSLAQ 299
>AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28686932-28688506 REVERSE LENGTH=285
Length = 285
Score = 45.1 bits (105), Expect = 9e-06, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 7 TRLFISRLSFFTSKEQLKTLFSPFGAVTEATLVLDPKTKRPKGFGFVSYESEIEAEKA 64
T++F+ L++ T E L+ F +G + EA ++ D T R KG+GFV++ A +A
Sbjct: 24 TKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRA 81