Miyakogusa Predicted Gene

Lj0g3v0078729.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0078729.1 Non Chatacterized Hit- tr|C5XDZ1|C5XDZ1_SORBI
Putative uncharacterized protein Sb02g039025
(Fragment,60.26,3e-19,RNA-binding domain, RBD,NULL; RRM_1,RNA
recognition motif domain; RNA recognition motif,RNA
recognit,CUFF.4022.1
         (264 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC73536 similar to UniRef100_A7NZ57 Cluster: Chromosome...   509   e-144

>gnl|LJGI|TC73536 similar to UniRef100_A7NZ57 Cluster: Chromosome chr6 scaffold_3,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr6 scaffold_3, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (93%)
          Length = 517

 Score =  509 bits (257), Expect = e-144
 Identities = 264/265 (99%), Gaps = 1/265 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtctcaaggaatcgggacaaggctattcatcagcag-actatcatttttcacttcaaa 59
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 95  atgtctcaaggaatcgggacaaggctattcatcagcaggactatcatttttcacttcaaa 154

                                                                       
Query: 60  ggagcagctgaagacgctgttctctccattcggagcagttacagaagctacacttgtgtt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 ggagcagctgaagacgctgttctctccattcggagcagttacagaagctacacttgtgtt 214

                                                                       
Query: 120 ggacccgaaaacaaaaaggcccaaagggtttggttttgtatcctacgagtctgaaattga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ggacccgaaaacaaaaaggcccaaagggtttggttttgtatcctacgagtctgaaattga 274

                                                                       
Query: 180 agcggaaaaggctatcaaaggcatgaatggcaggataattcaaggaaggctgattttcgt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 agcggaaaaggctatcaaaggcatgaatggcaggataattcaaggaaggctgattttcgt 334

                                    
Query: 240 tgaacctgcaaagatgacatgaacc 264
           |||||||||||||||||||||||||
Sbjct: 335 tgaacctgcaaagatgacatgaacc 359