Miyakogusa Predicted Gene

Lj0g3v0076359.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0076359.1 Non Chatacterized Hit- tr|D5ACI0|D5ACI0_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,56.03,5e-19,seg,NULL,gene.g5618.t1.1
         (122 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08520.1 | Symbols:  | Duplicated homeodomain-like superfamil...    95   8e-21
AT1G49010.1 | Symbols:  | Duplicated homeodomain-like superfamil...    46   5e-06

>AT5G08520.1 | Symbols:  | Duplicated homeodomain-like superfamily
           protein | chr5:2755470-2757741 REVERSE LENGTH=298
          Length = 298

 Score = 95.1 bits (235), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 65/137 (47%), Positives = 71/137 (51%), Gaps = 24/137 (17%)

Query: 1   MNKDRRRSSIHDITSVNNGDIAAPQGPIXXXXXXXXXXXXXX-----------XXXXAFP 49
           MNKDRRRSSIHDITSV N D++ PQGPI                                
Sbjct: 170 MNKDRRRSSIHDITSVGNADVSTPQGPITGQNNSNNNNNNNNNNSSPAVAGGGNKSAKQA 229

Query: 50  TSTGVPGSGMYATPTIGQPIGGPLISAVGTPVNLPGAPPHMVY-----PVPGALVPGAPM 104
            S   PG  MY TP IGQP       AVGTPVNLP APPHM Y     PVPG++VPGA M
Sbjct: 230 VSQAPPGPPMYGTPAIGQP-------AVGTPVNLP-APPHMAYGVHAAPVPGSVVPGAAM 281

Query: 105 NMVPITYPMPHTSAPHR 121
           N+  + Y MP T   HR
Sbjct: 282 NIGQMPYTMPRTPTAHR 298


>AT1G49010.1 | Symbols:  | Duplicated homeodomain-like superfamily
           protein | chr1:18132714-18133778 FORWARD LENGTH=314
          Length = 314

 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 1   MNKDRRRSSIHDITSVNNGDIAAP---QGPIXXXXXXXXXXXXXXXXXXAFPTSTGVPGS 57
           MN+DRRRSSIHDIT+VNN   A     Q P                        T + G 
Sbjct: 186 MNRDRRRSSIHDITTVNNQAPAVTGGGQQPQVVKHRPAQPQPQPQPQPQQHHPPT-MAGL 244

Query: 58  GMYATPTIGQPIGGP---LISAVGTPVNLP 84
           GMY    +GQPI  P   + SAVGTPV LP
Sbjct: 245 GMYGGAPVGQPIIAPPDHMGSAVGTPVMLP 274