Miyakogusa Predicted Gene

Lj0g3v0054449.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0054449.1 tr|F2CTL2|F2CTL2_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,67.14,2e-17,SUBFAMILY NOT
NAMED,NULL; HISTIDINE TRIAD (HIT) PROTEIN,Histidine triad (HIT)
protein; no descriptio,CUFF.2406.1
         (82 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58240.1 | Symbols: FHIT | FRAGILE HISTIDINE TRIAD | chr5:235...    64   3e-11
AT5G58240.2 | Symbols: FHIT | FRAGILE HISTIDINE TRIAD | chr5:235...    64   3e-11

>AT5G58240.1 | Symbols: FHIT | FRAGILE HISTIDINE TRIAD |
           chr5:23558349-23559313 REVERSE LENGTH=180
          Length = 180

 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 39/70 (55%)

Query: 11  KDGPQAGQSVPHVHIHLLPRKSGXXXXXXXXXXXXXXXXXXXXXXXXVDIERKDRSLEEM 70
           +DGPQAGQ+VPHVHIH+LPRK G                        +D +R DRS++EM
Sbjct: 108 QDGPQAGQTVPHVHIHILPRKGGDFEKNDEIYDALDEKEKELKQKLDLDKDRVDRSIQEM 167

Query: 71  AQEADEYRKF 80
           A EA +YR  
Sbjct: 168 ADEASQYRSL 177


>AT5G58240.2 | Symbols: FHIT | FRAGILE HISTIDINE TRIAD |
           chr5:23558349-23559171 REVERSE LENGTH=160
          Length = 160

 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 39/70 (55%)

Query: 11  KDGPQAGQSVPHVHIHLLPRKSGXXXXXXXXXXXXXXXXXXXXXXXXVDIERKDRSLEEM 70
           +DGPQAGQ+VPHVHIH+LPRK G                        +D +R DRS++EM
Sbjct: 88  QDGPQAGQTVPHVHIHILPRKGGDFEKNDEIYDALDEKEKELKQKLDLDKDRVDRSIQEM 147

Query: 71  AQEADEYRKF 80
           A EA +YR  
Sbjct: 148 ADEASQYRSL 157