Miyakogusa Predicted Gene
- Lj0g3v0050159.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0050159.1 Non Characterized Hit- tr|D8RS46|D8RS46_SELML
Putative uncharacterized protein OS=Selaginella
moelle,33.1,0.00000000000007,DDT,DDT domain superfamily; domain in
different transcription and chromo,DDT domain, subgroup;
DDT,D,CUFF.2386.1
(402 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g095210.1 | nucleosome/chromatin assembly factor group pro... 516 e-146
Medtr2g014490.2 | homeobox domain protein | HC | chr2:4157060-41... 65 1e-10
Medtr2g014490.1 | homeobox domain protein | HC | chr2:4156582-41... 65 1e-10
Medtr4g078860.3 | homeodomain transcriptional regulator | HC | c... 58 1e-08
Medtr4g078860.2 | homeodomain transcriptional regulator | HC | c... 58 1e-08
Medtr4g078860.1 | homeodomain transcriptional regulator | HC | c... 58 2e-08
Medtr4g088375.3 | homeobox domain protein | HC | chr4:34983103-3... 58 2e-08
Medtr4g078860.4 | homeodomain transcriptional regulator | HC | c... 58 2e-08
Medtr4g088375.4 | homeobox domain protein | HC | chr4:34983006-3... 58 2e-08
Medtr4g088375.1 | homeobox domain protein | HC | chr4:34983103-3... 58 2e-08
Medtr4g088375.2 | homeobox domain protein | HC | chr4:34983103-3... 58 2e-08
>Medtr8g095210.1 | nucleosome/chromatin assembly factor group
protein, putative | HC | chr8:39816547-39824398 |
20130731
Length = 697
Score = 516 bits (1330), Expect = e-146, Method: Compositional matrix adjust.
Identities = 265/406 (65%), Positives = 306/406 (75%), Gaps = 15/406 (3%)
Query: 1 MFCVGDLLMVWDFCASFGKPLNLWPYSLEDFENAICHKDSNVVLLVESHAALFRVLIKED 60
M CVG+LLMVWDFC SFGK LNL PYSLEDFENAICHKD N VLLVESHAALFRVLIK+D
Sbjct: 303 MHCVGNLLMVWDFCTSFGKQLNLSPYSLEDFENAICHKDGNAVLLVESHAALFRVLIKDD 362
Query: 61 GEYSSIVKKR---KITLINWTEYLCDFLQMINIPALRQHEGTIKRGHYGLLDANVKLGIL 117
GEY+S V+KR KIT++NW EYLCDFL+MINIP LR EGTIKRGHY L+DA+ KL IL
Sbjct: 363 GEYTSAVQKRSVKKITMVNWREYLCDFLEMINIPQLRHCEGTIKRGHYCLVDASAKLEIL 422
Query: 118 SELVNQVLETGAFRETMDELMEQRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGIMN 177
ELVN+ LET FRE +DE +EQRQ N
Sbjct: 423 CELVNRALETAIFRENLDEFIEQRQELGASKREQALEEGRKRREQKERLKADSES----N 478
Query: 178 GHHPNSANGDVGKKSNGEIQNGDVGKKSNGKIESSRQNNPLGASGTKHSNSASKKIPTKL 237
G+H N A D+ +N QNG VGKK NG+IESSRQ+N LG SG K S+ ASKK P L
Sbjct: 479 GNHLNGA--DILSNNNHIKQNGHVGKKINGEIESSRQDNSLGKSGVKRSSPASKKTPKNL 536
Query: 238 NSELKEPVENGKDILKQSKGDKDPSEKNS-KQKKEYFQKEMEKRLIRRSPLGQDRERNRY 296
++ELKEP ENGK++ + KDPSEKNS +Q++EYF++EMEKR I RSPLG+DR+ NRY
Sbjct: 537 DTELKEPAENGKELSR-----KDPSEKNSIEQRREYFEREMEKRPISRSPLGKDRDYNRY 591
Query: 297 WWFHRDWRIFVENKDSTVWGYYSSKEELDALMGSLNCKGVRERALQKQLEKYYSSICSEL 356
WWF RD RIFVE+ DS WGYYSSKEELDAL+GSLNCKG RERALQKQLE Y SIC+EL
Sbjct: 592 WWFRRDGRIFVESCDSKEWGYYSSKEELDALIGSLNCKGERERALQKQLEINYRSICTEL 651
Query: 357 RKRSKDLMSNTASDESVLRRSTRVRAPPRQNPANAFLRYANKWKEE 402
+KRSK+L+ N A+DESVLRRSTRVRAPPR+NPA+AFL+Y NKWKE+
Sbjct: 652 QKRSKELLQNIANDESVLRRSTRVRAPPRENPASAFLKYVNKWKED 697
>Medtr2g014490.2 | homeobox domain protein | HC | chr2:4157060-4148227
| 20130731
Length = 1807
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 10/117 (8%)
Query: 254 QSKGDKDPSEKNSKQKKEYFQKEMEKRLIRRS-PLGQDRERNRYWWFHRDW--------R 304
QS+ S+++ Q K Y E+ + RS PLGQDR RNRYW F R
Sbjct: 1124 QSQMHAQYSKRSRSQLKSYISHIAEEMYVYRSLPLGQDRRRNRYWQFVASASSNDPGSGR 1183
Query: 305 IFVENKDSTVWGYYSSKEELDALMGSLNCKGVRERALQKQLEKYYSSICSELRKRSK 361
IFVE+ D + W S+E D L+ SL+ +G+RE L+ L+K S +RK ++
Sbjct: 1184 IFVEHHDGS-WRLIDSEEAFDILLTSLDSRGIRESHLRLMLQKIEKSFKENVRKNTQ 1239
>Medtr2g014490.1 | homeobox domain protein | HC | chr2:4156582-4148228
| 20130731
Length = 1796
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 10/117 (8%)
Query: 254 QSKGDKDPSEKNSKQKKEYFQKEMEKRLIRRS-PLGQDRERNRYWWFHRDW--------R 304
QS+ S+++ Q K Y E+ + RS PLGQDR RNRYW F R
Sbjct: 1112 QSQMHAQYSKRSRSQLKSYISHIAEEMYVYRSLPLGQDRRRNRYWQFVASASSNDPGSGR 1171
Query: 305 IFVENKDSTVWGYYSSKEELDALMGSLNCKGVRERALQKQLEKYYSSICSELRKRSK 361
IFVE+ D + W S+E D L+ SL+ +G+RE L+ L+K S +RK ++
Sbjct: 1172 IFVEHHDGS-WRLIDSEEAFDILLTSLDSRGIRESHLRLMLQKIEKSFKENVRKNTQ 1227
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 4 VGDLLMVWDFCASFGKPLNLWPYSLEDFENAICHKDSNVVLLVESHAALFRVLIKE 59
VG+LLMVW F +F L LWP++L++F A DS LL E H A+ +++IK+
Sbjct: 573 VGNLLMVWRFLITFADALELWPFTLDEFVQAFHDYDSR--LLGEIHVAVLKMIIKD 626
>Medtr4g078860.3 | homeodomain transcriptional regulator | HC |
chr4:30499085-30486036 | 20130731
Length = 1413
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 262 SEKNSKQKKEYFQKEMEKRLIRRS-PLGQDRERNRYWWFHRDW--------RIFVENKDS 312
+EK K Y E+ + RS PLG DR RNRYW F RIFVE D
Sbjct: 1100 AEKARSNLKSYIDHLAEQTYMYRSLPLGLDRRRNRYWQFVTSASQNDPGAGRIFVELHDG 1159
Query: 313 TVWGYYSSKEELDALMGSLNCKGVRERALQKQLEKYYSSICSELRK 358
W S E DAL+ SL+ +G+RE L L++ +S +R+
Sbjct: 1160 -CWKLIDSVEGFDALLVSLDLRGIRESHLHMMLQRIETSFKESVRR 1204
>Medtr4g078860.2 | homeodomain transcriptional regulator | HC |
chr4:30499257-30483381 | 20130731
Length = 1513
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 262 SEKNSKQKKEYFQKEMEKRLIRRS-PLGQDRERNRYWWFHRDW--------RIFVENKDS 312
+EK K Y E+ + RS PLG DR RNRYW F RIFVE D
Sbjct: 1100 AEKARSNLKSYIDHLAEQTYMYRSLPLGLDRRRNRYWQFVTSASQNDPGAGRIFVELHDG 1159
Query: 313 TVWGYYSSKEELDALMGSLNCKGVRERALQKQLEKYYSSICSELRK 358
W S E DAL+ SL+ +G+RE L L++ +S +R+
Sbjct: 1160 -CWKLIDSVEGFDALLVSLDLRGIRESHLHMMLQRIETSFKESVRR 1204
>Medtr4g078860.1 | homeodomain transcriptional regulator | HC |
chr4:30499257-30483381 | 20130731
Length = 1763
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 262 SEKNSKQKKEYFQKEMEKRLIRRS-PLGQDRERNRYWWFHRDW--------RIFVENKDS 312
+EK K Y E+ + RS PLG DR RNRYW F RIFVE D
Sbjct: 1100 AEKARSNLKSYIDHLAEQTYMYRSLPLGLDRRRNRYWQFVTSASQNDPGAGRIFVELHDG 1159
Query: 313 TVWGYYSSKEELDALMGSLNCKGVRERALQKQLEKYYSSICSELRK 358
W S E DAL+ SL+ +G+RE L L++ +S +R+
Sbjct: 1160 -CWKLIDSVEGFDALLVSLDLRGIRESHLHMMLQRIETSFKESVRR 1204
>Medtr4g088375.3 | homeobox domain protein | HC |
chr4:34983103-34993442 | 20130731
Length = 1464
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 262 SEKNSKQKKEYFQKEMEKRLIRRS-PLGQDRERNRYWWFHRDW--------RIFVENKDS 312
S+++ Q K + E+ I RS PLGQDR NRYW F RIFVE D
Sbjct: 802 SKRSRSQLKSFISHLAEEMYIYRSLPLGQDRRHNRYWQFVASASCNDPGSGRIFVEYHDG 861
Query: 313 TVWGYYSSKEELDALMGSLNCKGVRERALQKQLEKYYSSICSELRKRSK 361
W S+E DAL+ SL+ +G+RE L+ L K + ++K +K
Sbjct: 862 K-WRLIDSEEAFDALLNSLDSRGIRESHLRLMLLKIENIFKENVQKNAK 909
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 4 VGDLLMVWDFCASFGKPLNLWPYSLEDFENAICHKDSNVVLLVESHAALFRVLIKE 59
VG+LLMVW F +F L LWP++L++F A DS LL E H AL +V+IK+
Sbjct: 266 VGNLLMVWRFLITFADVLELWPFTLDEFVQAFHDYDSR--LLGEIHVALLKVIIKD 319
>Medtr4g078860.4 | homeodomain transcriptional regulator | HC |
chr4:30499257-30483381 | 20130731
Length = 1737
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 262 SEKNSKQKKEYFQKEMEKRLIRRS-PLGQDRERNRYWWFHRDW--------RIFVENKDS 312
+EK K Y E+ + RS PLG DR RNRYW F RIFVE D
Sbjct: 1074 AEKARSNLKSYIDHLAEQTYMYRSLPLGLDRRRNRYWQFVTSASQNDPGAGRIFVELHDG 1133
Query: 313 TVWGYYSSKEELDALMGSLNCKGVRERALQKQLEKYYSSICSELRK 358
W S E DAL+ SL+ +G+RE L L++ +S +R+
Sbjct: 1134 -CWKLIDSVEGFDALLVSLDLRGIRESHLHMMLQRIETSFKESVRR 1178
>Medtr4g088375.4 | homeobox domain protein | HC |
chr4:34983006-34993442 | 20130731
Length = 1682
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 262 SEKNSKQKKEYFQKEMEKRLIRRS-PLGQDRERNRYWWFHRDW--------RIFVENKDS 312
S+++ Q K + E+ I RS PLGQDR NRYW F RIFVE D
Sbjct: 1021 SKRSRSQLKSFISHLAEEMYIYRSLPLGQDRRHNRYWQFVASASCNDPGSGRIFVEYHDG 1080
Query: 313 TVWGYYSSKEELDALMGSLNCKGVRERALQKQLEKYYSSICSELRKRSK 361
W S+E DAL+ SL+ +G+RE L+ L K + ++K +K
Sbjct: 1081 K-WRLIDSEEAFDALLNSLDSRGIRESHLRLMLLKIENIFKENVQKNAK 1128
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 4 VGDLLMVWDFCASFGKPLNLWPYSLEDFENAICHKDSNVVLLVESHAALFRVLIKE 59
VG+LLMVW F +F L LWP++L++F A DS LL E H AL +V+IK+
Sbjct: 485 VGNLLMVWRFLITFADVLELWPFTLDEFVQAFHDYDSR--LLGEIHVALLKVIIKD 538
>Medtr4g088375.1 | homeobox domain protein | HC |
chr4:34983103-34993442 | 20130731
Length = 1717
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 262 SEKNSKQKKEYFQKEMEKRLIRRS-PLGQDRERNRYWWFHRDW--------RIFVENKDS 312
S+++ Q K + E+ I RS PLGQDR NRYW F RIFVE D
Sbjct: 1055 SKRSRSQLKSFISHLAEEMYIYRSLPLGQDRRHNRYWQFVASASCNDPGSGRIFVEYHDG 1114
Query: 313 TVWGYYSSKEELDALMGSLNCKGVRERALQKQLEKYYSSICSELRKRSK 361
W S+E DAL+ SL+ +G+RE L+ L K + ++K +K
Sbjct: 1115 K-WRLIDSEEAFDALLNSLDSRGIRESHLRLMLLKIENIFKENVQKNAK 1162
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 4 VGDLLMVWDFCASFGKPLNLWPYSLEDFENAICHKDSNVVLLVESHAALFRVLIKE 59
VG+LLMVW F +F L LWP++L++F A DS LL E H AL +V+IK+
Sbjct: 519 VGNLLMVWRFLITFADVLELWPFTLDEFVQAFHDYDSR--LLGEIHVALLKVIIKD 572
>Medtr4g088375.2 | homeobox domain protein | HC |
chr4:34983103-34993442 | 20130731
Length = 1683
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 262 SEKNSKQKKEYFQKEMEKRLIRRS-PLGQDRERNRYWWFHRDW--------RIFVENKDS 312
S+++ Q K + E+ I RS PLGQDR NRYW F RIFVE D
Sbjct: 1021 SKRSRSQLKSFISHLAEEMYIYRSLPLGQDRRHNRYWQFVASASCNDPGSGRIFVEYHDG 1080
Query: 313 TVWGYYSSKEELDALMGSLNCKGVRERALQKQLEKYYSSICSELRKRSK 361
W S+E DAL+ SL+ +G+RE L+ L K + ++K +K
Sbjct: 1081 K-WRLIDSEEAFDALLNSLDSRGIRESHLRLMLLKIENIFKENVQKNAK 1128
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 4 VGDLLMVWDFCASFGKPLNLWPYSLEDFENAICHKDSNVVLLVESHAALFRVLIKE 59
VG+LLMVW F +F L LWP++L++F A DS LL E H AL +V+IK+
Sbjct: 485 VGNLLMVWRFLITFADVLELWPFTLDEFVQAFHDYDSR--LLGEIHVALLKVIIKD 538