Miyakogusa Predicted Gene

Lj0g3v0050159.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0050159.1 Non Chatacterized Hit- tr|D8RS46|D8RS46_SELML
Putative uncharacterized protein OS=Selaginella
moelle,33.1,0.00000000000007,DDT,DDT domain superfamily; domain in
different transcription and chromo,DDT domain, subgroup;
DDT,D,CUFF.2386.1
         (402 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08630.1 | Symbols:  | DDT domain-containing protein | chr5:2...   359   2e-99
AT5G44180.1 | Symbols:  | Homeodomain-like transcriptional regul...    61   1e-09
AT1G28420.1 | Symbols: HB-1 | homeobox-1 | chr1:9979936-9987460 ...    54   2e-07

>AT5G08630.1 | Symbols:  | DDT domain-containing protein |
           chr5:2798575-2802138 REVERSE LENGTH=723
          Length = 723

 Score =  359 bits (921), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 203/433 (46%), Positives = 265/433 (61%), Gaps = 37/433 (8%)

Query: 1   MFCVGDLLMVWDFCASFGKPLNLWPYSLEDFENAICHKDSNVVLLVESHAALFRVLIKED 60
           M CVGDLLMVWDFC SFG+ L+LW +SLEDFENA+CHK+SN+VL++E HA+LFR LI E 
Sbjct: 297 MDCVGDLLMVWDFCTSFGRQLHLWRFSLEDFENAVCHKESNLVLIMEVHASLFRFLINER 356

Query: 61  GEYSSIVKKR----KITLINWTEYLCDFLQMINIPALRQHEGTIKRGHYGLLDANVKLGI 116
           G+    +++R    KITLI W EYLCDFL+ +N P L    GTIKRGHYGLLD NVKL I
Sbjct: 357 GDSFKALQRRSRKSKITLITWAEYLCDFLESVNTPDLCFDVGTIKRGHYGLLDPNVKLKI 416

Query: 117 LSELVNQVLETGAFRETMDELMEQRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGIM 176
           L ELVN + ETG F+  +DEL+EQR                               NG++
Sbjct: 417 LRELVNHITETGMFKGEIDELVEQRHALGAARREEALAEARQIREEKERSKTGEEANGVL 476

Query: 177 NGHH----PNSA----NGDVGKKS-----NGEIQNGDVGKKSNGKIESSRQNNPLGASGT 223
           + +      NSA    + +  KK+       +++NG V   S+  IE S +         
Sbjct: 477 DNNRLEKKKNSAQVLESSEDSKKNESTAGGSKMENGSV---SSENIEKSEKRLIGNVYLR 533

Query: 224 KHSNSASKKIPTKLNSELKEPVEN--------GKDILKQSKGDKDPSEKNS------KQK 269
           KH    +    TK+  + +E  E         G  + KQ        EK +      +Q+
Sbjct: 534 KHKRQMTD---TKIEPKEEEEDEKAEEDEEEKGFSVKKQEVKSASEDEKGTFERRGPEQR 590

Query: 270 KEYFQKEMEKRLIRRSPLGQDRERNRYWWFHRDWRIFVENKDSTVWGYYSSKEELDALMG 329
           ++Y+++EMEK +IR +PLG+DR+ NRYWWF  + RIFVEN DS  WGYY++KEELDALMG
Sbjct: 591 RQYYEREMEKIVIRTNPLGKDRDYNRYWWFRSNGRIFVENSDSEEWGYYTAKEELDALMG 650

Query: 330 SLNCKGVRERALQKQLEKYYSSICSELRKRSKDLMSNTASDESVLRRSTRVRAPPRQNPA 389
           SLN KG RE +L  QLE +Y  ICS L+KR+KD+  N   +E+V+RRSTRVRAP  +NPA
Sbjct: 651 SLNRKGERELSLYTQLEIFYDRICSTLQKRTKDIAHNIEMEEAVVRRSTRVRAPLHENPA 710

Query: 390 NAFLRYANKWKEE 402
           +AFLRY NKWKE+
Sbjct: 711 SAFLRYVNKWKED 723


>AT5G44180.1 | Symbols:  | Homeodomain-like transcriptional regulator
            | chr5:17783172-17789872 FORWARD LENGTH=1694
          Length = 1694

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 57/115 (49%), Gaps = 10/115 (8%)

Query: 253  KQSKGDKDPSEKNSKQKKEYFQKEMEKRLIRRS-PLGQDRERNRYWWFHRDW-------- 303
            +Q +G     E+   Q K Y   + E+  + RS PLGQDR RNRYW F            
Sbjct: 1041 QQQQGYTADRERLRAQLKAYVGYKAEELYVYRSLPLGQDRRRNRYWRFSASASRNDPGCG 1100

Query: 304  RIFVENKDSTVWGYYSSKEELDALMGSLNCKGVRERALQKQLEKYYSSICSELRK 358
            RIFVE +D   W    S+E  D L+ SL+ +GVRE  L   L K  +S    LR+
Sbjct: 1101 RIFVELQDGR-WRLIDSEEAFDYLVKSLDVRGVRESHLHFMLLKIEASFKEALRR 1154


>AT1G28420.1 | Symbols: HB-1 | homeobox-1 | chr1:9979936-9987460
           FORWARD LENGTH=1705
          Length = 1705

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 3   CVGDLLMVWDFCASFGKPLNLWPYSLEDFENAICHKDSNVVLLVESHAALFRVLIKE 59
            VG+LLMVW F  SF   L+LWP++L++F  A    DS   LL E H  L R +I++
Sbjct: 551 TVGNLLMVWRFLISFSDVLDLWPFTLDEFIQAFHDYDSR--LLGEIHVTLLRSIIRD 605



 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 25/158 (15%)

Query: 217  PLGASGTKHSNSASKKIPTKLNSELKEPVENGKDILKQSKGDKD-------------PSE 263
            P+  S T+  +S  +  P++L  E K P+E+  + L +S  ++               S+
Sbjct: 1022 PIIQSSTRERDSFDRD-PSQLLDETK-PLEDLSNDLHKSSAERALINQDANISQENYASK 1079

Query: 264  KNSKQKKEYFQKEMEKRLIRRS-PLGQDRERNRYWWFHRDWR--------IFVENKDSTV 314
            ++  Q K Y   + E+    RS PLGQDR  NRYW F             +FVE  D   
Sbjct: 1080 RSRSQLKSYIGHKAEEVYPYRSLPLGQDRRHNRYWHFAVSVSKSDPCSRLLFVELHDGK- 1138

Query: 315  WGYYSSKEELDALMGSLNCKGVRERALQKQLEKYYSSI 352
            W    S+E  D L+ SL+ +G+RE  L+  L+K   S 
Sbjct: 1139 WLLIDSEEAFDILVASLDMRGIRESHLRIMLQKIEGSF 1176