Miyakogusa Predicted Gene

Lj0g3v0048699.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0048699.1 Non Chatacterized Hit- tr|I0YIK5|I0YIK5_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,40.96,0.000004,BRG-1 ASSOCIATED FACTOR 250 (BAF250),NULL;
seg,NULL,CUFF.2267.1
         (463 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G22990.1 | Symbols: LFR | ARM repeat superfamily protein | ch...   592   e-169

>AT3G22990.1 | Symbols: LFR | ARM repeat superfamily protein |
           chr3:8164015-8166145 FORWARD LENGTH=460
          Length = 460

 Score =  592 bits (1526), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 307/465 (66%), Positives = 359/465 (77%), Gaps = 7/465 (1%)

Query: 1   MQKREQXXXXXXXXXXXXTPAKRGRPFGSGNNSXXXXXXXXXXXXXXPST-LLGPSLHVH 59
           MQKRE              PAKRGRPFGS + +                + LLGPSL VH
Sbjct: 1   MQKRELGKSGGNSGGSSGPPAKRGRPFGSTSANSAAAAAAAAAADAMSPSALLGPSLLVH 60

Query: 60  NSFADQNNKRIVLALQSGLKSELTWALNTLTLLSFKEKDDMRRDATPLAKIPGLLDALLQ 119
           NSF +QNN+RIVLALQSGLKSE+TWALNTLTLLSFKEK+D+RRD  PLAKI GLLDALL 
Sbjct: 61  NSFVEQNNRRIVLALQSGLKSEVTWALNTLTLLSFKEKEDIRRDVMPLAKIAGLLDALLL 120

Query: 120 VIDDWRDVGLPKELVKKSRVRTLGVNSVATGFGNQYQALSSTATLHRPGLGSASAGTEST 179
           +IDDWRD+ LPK+L + +RVRTLG N+  TGFGN+Y AL   A++  PG G  S+  E+ 
Sbjct: 121 IIDDWRDIALPKDLTRGTRVRTLGTNASVTGFGNEYDAL---ASIQPPGSGIGSSAAEAL 177

Query: 180 -QQSGGATKSRFSELWFDEDGLFNLDDEGRAEKQQCAVAASNIIRNFSFMPDNELIMAQH 238
            ++S G  +S  S+ W +EDGLFNLDDEGR+EKQ CA+AASN+IRNFSFMPDNE++MAQH
Sbjct: 178 GKKSTGKHQS--SQWWMEEDGLFNLDDEGRSEKQMCAIAASNVIRNFSFMPDNEVVMAQH 235

Query: 239 RHCLETAFQCIEDHIIEDEELVTNALETIVNLAPLLDLRXXXXXXXXXXXXTEKRAVLAI 298
           RHCLET FQCI DH+ EDEELVTN+LETIVNLA L+DLR             EK+AV A+
Sbjct: 236 RHCLETVFQCIHDHMTEDEELVTNSLETIVNLAHLMDLRIFSSLKQSYININEKKAVQAV 295

Query: 299 MGMLESTVKAWHCAAAELLGRLIINPDNEPFLLPFFPQIHKRLVDLISXXXXXXXXXXXX 358
           +G+L S+VKAW+CAAAELLGRLIINPDNEPF+ P  PQIHKRL+DL+S            
Sbjct: 296 VGILNSSVKAWNCAAAELLGRLIINPDNEPFISPLIPQIHKRLIDLLSIQAVDAQAAAVG 355

Query: 359 XXYNLAEVNMDCRLKIASERWAIDRLLKVIKTPHPVPEVCRKAAMILESLVSEPQNRTLL 418
             YNL EVNMDCRLK+ASERWA+DRLLKVIKTPHPVPEVCRKAAMILE+LVSEPQNR LL
Sbjct: 356 ALYNLVEVNMDCRLKLASERWAVDRLLKVIKTPHPVPEVCRKAAMILENLVSEPQNRGLL 415

Query: 419 LAYENAFAEILFTEGRYSDTFARILYELTSRPSNKVATARGIWGM 463
           LAYENAFAE+LF EG+YSD+FARILYELT+R +++VA+ARGIWGM
Sbjct: 416 LAYENAFAELLFQEGKYSDSFARILYELTARSNSRVASARGIWGM 460