Miyakogusa Predicted Gene

Lj0g3v0044989.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0044989.1 tr|Q5WN07|Q5WN07_ORYSJ Os05g0150300 protein
OS=Oryza sativa subsp. japonica GN=P0001A07.2 PE=4
SV=1,48.53,0.00000004, ,CUFF.2182.1
         (57 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g118845.2 | chromatin remodeling factor, putative | HC | c...    62   1e-10
Medtr4g118845.1 | chromatin remodeling factor, putative | HC | c...    62   1e-10
Medtr2g020000.1 | chromatin remodeling factor, putative | HC | c...    62   2e-10

>Medtr4g118845.2 | chromatin remodeling factor, putative | HC |
           chr4:49253207-49260120 | 20130731
          Length = 876

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/68 (48%), Positives = 40/68 (58%), Gaps = 18/68 (26%)

Query: 1   MTRLLDLIEDYLMFQGYQYSCIDDNTDGEHRKASMAVF------------------VANN 42
           MTRLLD++EDYLMF+GYQY  ID NT G+ R AS+  F                  +  N
Sbjct: 327 MTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIEAFNKPGSEKFVFLLSTRAGGLGIN 386

Query: 43  LATADIVI 50
           LATAD+VI
Sbjct: 387 LATADVVI 394


>Medtr4g118845.1 | chromatin remodeling factor, putative | HC |
           chr4:49251792-49260219 | 20130731
          Length = 1063

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/68 (48%), Positives = 40/68 (58%), Gaps = 18/68 (26%)

Query: 1   MTRLLDLIEDYLMFQGYQYSCIDDNTDGEHRKASMAVF------------------VANN 42
           MTRLLD++EDYLMF+GYQY  ID NT G+ R AS+  F                  +  N
Sbjct: 514 MTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIEAFNKPGSEKFVFLLSTRAGGLGIN 573

Query: 43  LATADIVI 50
           LATAD+VI
Sbjct: 574 LATADVVI 581


>Medtr2g020000.1 | chromatin remodeling factor, putative | HC |
           chr2:6619806-6610735 | 20130731
          Length = 1066

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/68 (48%), Positives = 40/68 (58%), Gaps = 18/68 (26%)

Query: 1   MTRLLDLIEDYLMFQGYQYSCIDDNTDGEHRKASMAVF------------------VANN 42
           MTRLLD++EDYLMF+GYQY  ID NT G+ R AS+  F                  +  N
Sbjct: 517 MTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGIN 576

Query: 43  LATADIVI 50
           LATAD+VI
Sbjct: 577 LATADVVI 584