Miyakogusa Predicted Gene
- Lj0g3v0044989.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0044989.1 tr|Q5WN07|Q5WN07_ORYSJ Os05g0150300 protein
OS=Oryza sativa subsp. japonica GN=P0001A07.2 PE=4
SV=1,48.53,0.00000004, ,CUFF.2182.1
(57 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 | c... 60 4e-10
AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 | c... 60 4e-10
AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 57 3e-09
AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 57 3e-09
AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 57 3e-09
>AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1072
Length = 1072
Score = 59.7 bits (143), Expect = 4e-10, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 18/68 (26%)
Query: 1 MTRLLDLIEDYLMFQGYQYSCIDDNTDGEHRKASMAVF------------------VANN 42
MTRLLD++EDYLM++GYQY ID NT G+ R AS+ + + N
Sbjct: 520 MTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGIN 579
Query: 43 LATADIVI 50
LATAD+VI
Sbjct: 580 LATADVVI 587
>AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1069
Length = 1069
Score = 59.7 bits (143), Expect = 4e-10, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 18/68 (26%)
Query: 1 MTRLLDLIEDYLMFQGYQYSCIDDNTDGEHRKASMAVF------------------VANN 42
MTRLLD++EDYLM++GYQY ID NT G+ R AS+ + + N
Sbjct: 520 MTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGIN 579
Query: 43 LATADIVI 50
LATAD+VI
Sbjct: 580 LATADVVI 587
>AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1056
Length = 1056
Score = 56.6 bits (135), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 18/68 (26%)
Query: 1 MTRLLDLIEDYLMFQGYQYSCIDDNTDGEHRKASMAVF------------------VANN 42
MTRLLD++EDYLM++GY Y ID NT G+ R AS+ + + N
Sbjct: 515 MTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGIN 574
Query: 43 LATADIVI 50
LATAD+VI
Sbjct: 575 LATADVVI 582
>AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1057
Length = 1057
Score = 56.6 bits (135), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 18/68 (26%)
Query: 1 MTRLLDLIEDYLMFQGYQYSCIDDNTDGEHRKASMAVF------------------VANN 42
MTRLLD++EDYLM++GY Y ID NT G+ R AS+ + + N
Sbjct: 515 MTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGIN 574
Query: 43 LATADIVI 50
LATAD+VI
Sbjct: 575 LATADVVI 582
>AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1055
Length = 1055
Score = 56.6 bits (135), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 18/68 (26%)
Query: 1 MTRLLDLIEDYLMFQGYQYSCIDDNTDGEHRKASMAVF------------------VANN 42
MTRLLD++EDYLM++GY Y ID NT G+ R AS+ + + N
Sbjct: 515 MTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGIN 574
Query: 43 LATADIVI 50
LATAD+VI
Sbjct: 575 LATADVVI 582