Miyakogusa Predicted Gene

Lj0g3v0044979.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0044979.1 tr|C1MZB5|C1MZB5_MICPC SNF2 super family
OS=Micromonas pusilla (strain CCMP1545)
GN=MICPUCDRAFT_2826,66.67,0.17,seg,NULL,CUFF.2181.1
         (225 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AU252126 similar to UniRef100_UPI000016335A Cluster: CH...   220   3e-57
gnl|LJGI|CB827604 similar to UniRef100_A7NW74 Cluster: Chromosom...    72   2e-12

>gnl|LJGI|AU252126 similar to UniRef100_UPI000016335A Cluster: CHR11
           (CHROMATIN-REMODELING PROTEIN 11); DNA-dependent ATPase;
           n=1; Arabidopsis thaliana|Rep: CHR11
           (CHROMATIN-REMODELING PROTEIN 11); DNA-dependent ATPase
           - Arabidopsis thaliana, partial (5%)
          Length = 350

 Score =  220 bits (111), Expect = 3e-57
 Identities = 119/122 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggttctactggataaattactttccaaactaaaagaacggggttccagggcacttaaa 60
           |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 229 atggttctactggataaattactttccaaactaaaagaacnggattccagggcacttaaa 288

                                                                       
Query: 61  tttacacaggataccaatattcctgcattgatgacaatactgatggagaacatcgtaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 289 tttacacaggataccaatattcctgcattgatgacaatactgatggagaacatcggaaag 348

             
Query: 121 ct 122
           ||
Sbjct: 349 ct 350


>gnl|LJGI|CB827604 similar to UniRef100_A7NW74 Cluster: Chromosome chr5 scaffold_2,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr5 scaffold_2, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (3%)
          Length = 548

 Score = 71.9 bits (36), Expect = 2e-12
 Identities = 52/56 (92%), Gaps = 1/56 (1%)
 Strand = Plus / Plus

                                                                   
Query: 120 gcttccatggctgtttt-tgttgccaataatcttgctactgctgacattgtcattc 174
           |||||||| |||||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 5   gcttccattgctgttttttgttgccattaatcttgctactgctgacattgacattc 60