Miyakogusa Predicted Gene
- Lj0g3v0024799.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0024799.1 Non Characterized Hit- tr|H9VE67|H9VE67_PINTA
Uncharacterized protein (Fragment) OS=Pinus taeda
GN=0,57.69,2e-17,RNI-like,NULL; no
description,NULL,NODE_35593_length_1006_cov_204.871765.path1.1
(292 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g080020.1 | F-box protein MAX2 | HC | chr4:30974880-309776... 451 e-127
>Medtr4g080020.1 | F-box protein MAX2 | HC | chr4:30974880-30977678
| 20130731
Length = 711
Score = 451 bits (1161), Expect = e-127, Method: Compositional matrix adjust.
Identities = 234/299 (78%), Positives = 259/299 (86%), Gaps = 11/299 (3%)
Query: 1 MEVLSKKCPNLRVLRLGQFQGICLAIGSKLDGIALCQGLRSLSIHGCADLDDMGLIEIAR 60
+E+LS KCPNL+V++LGQFQGICLAIGS+LDGIALC GL+SLS++ C DLDDMGLIEI R
Sbjct: 312 LEMLSSKCPNLKVVKLGQFQGICLAIGSRLDGIALCHGLQSLSVNTCGDLDDMGLIEIGR 371
Query: 61 GCSRLVQFELQGCKLVTEKGLGTMACLLRKTLVDVKVSCCVNLDTAAALRALDPIRDRIE 120
GCSRLV+FE+QGCKLVTEKGL TMACLLR+TL+DVKV+ CVNLD AA LRAL+PIRDRIE
Sbjct: 372 GCSRLVRFEIQGCKLVTEKGLRTMACLLRRTLIDVKVASCVNLDAAATLRALEPIRDRIE 431
Query: 121 RLHVDCVWNGLKDSDDNMGGGLLNFDLN--DPNGGAEIMDCFGDEEC-EDPSKRKRQRCE 177
RLH+DC+W K+S DN G GL NFDLN D G+E+MDCFG EEC ED S RKRQRCE
Sbjct: 432 RLHLDCIW---KES-DNFGQGLFNFDLNTLDELNGSELMDCFGGEECGEDTSMRKRQRCE 487
Query: 178 YGLEGDDSLVQS----NGNGYYGKNWDRLRYLSLWIKVGDLLNLLPVAGLEDCPNLEEIR 233
YGLE DD VQS NGNGYYG +WDRL YLSLWIKVG+LL LPVAGLEDCPNLEEIR
Sbjct: 488 YGLEADDLFVQSNGNGNGNGYYGYSWDRLEYLSLWIKVGELLTQLPVAGLEDCPNLEEIR 547
Query: 234 VKVEGDCRGQPKPAESEFGLSILACYPQLSKMQLDCGDTRGYVLTAPSGQMDLSLWERF 292
+KVEGDCRGQPKPA EFGLSILACYPQLSKMQLDCGDT+GYV TAPSGQ+DLS WERF
Sbjct: 548 IKVEGDCRGQPKPAVREFGLSILACYPQLSKMQLDCGDTKGYVYTAPSGQLDLSWWERF 606